{"id":24528988,"url":"https://github.com/saezlab/cellnoptr","last_synced_at":"2025-04-14T17:10:52.337Z","repository":{"id":16171576,"uuid":"116661047","full_name":"saezlab/CellNOptR","owner":"saezlab","description":"Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.","archived":false,"fork":false,"pushed_at":"2024-04-11T09:29:01.000Z","size":19123,"stargazers_count":11,"open_issues_count":1,"forks_count":3,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-03-28T05:51:01.538Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"cellnopt/CellNOptR","license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/saezlab.png","metadata":{"files":{"readme":"Readme.md","changelog":"ChangeLog","contributing":null,"funding":null,"license":null,"code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-01-08T10:12:00.000Z","updated_at":"2025-01-21T11:57:16.000Z","dependencies_parsed_at":"2025-01-22T07:44:25.223Z","dependency_job_id":null,"html_url":"https://github.com/saezlab/CellNOptR","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FCellNOptR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FCellNOptR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FCellNOptR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2FCellNOptR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab","download_url":"https://codeload.github.com/saezlab/CellNOptR/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248923764,"owners_count":21183954,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-22T07:34:18.583Z","updated_at":"2025-04-14T17:10:52.311Z","avatar_url":"https://github.com/saezlab.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"CellNOptR\n=========\n\u003c!-- badges: start --\u003e\n  [![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)\n  [![BioC status](http://www.bioconductor.org/shields/build/release/bioc/CellNOptR.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/CellNOptR)\n  \u003c!-- badges: end --\u003e\n  \n\nTraining of boolean logic models of signalling networks using prior knowledge networks and perturbation data.\n\n- Please visit [CellNOptR](https://saezlab.github.io/CellNOptR/) for details about the project (references, news, ...)\n\n\n## Installation:\n\nBefore starting, make sure you have installed the latest version of R. For more information and download\nof R, please refer to [R project page](http://www.r-project.org/) . For more information about how to \ninstall R packages, please refer to [Installing packages](http://cran.r-project.org/doc/manuals/R-admin.html#Installing-packages).\n\n### Standard installation from Bioconductor\nTo install CellNOptR, type:\n```\nif (!requireNamespace(\"BiocManager\", quietly = TRUE))\n    install.packages(\"BiocManager\")\nBiocManager::install(\"CellNOptR\", version = \"3.8\")\n```\n\nThen, you can also install other CellNOptR related packages::\n```\nBiocManager::install(\"CNORdt\")\nBiocManager::install(\"CNORfeeder\")\nBiocManager::install(\"CNORfuzzy\")\nBiocManager::install(\"CNORode\")\n```\n\n\n### Installation from GitHub\nUsing the `devtools` package you can install the latest version from the GitHub repository:\n```\nif(!require(\"devtools\")) install.packages(\"devtools\")   # installs devtools package if not already installed\ndevtools::install_github(\"saezlab/CellNOptR\", build_vignettes = TRUE)\n```\nTo see the documentation of the package and a few examples, please type:\n```\nvignette(\"CellNOptR-vignette\")\n```\n\n\n\n### Install from a local copy of the package:\ninstall CellNOptR from a tar ball as follows:\n```\ninstall.packages(\"path_to_CellNOptR/CellNOptR_1.0.0.tar.gz\", repos=NULL, type=\"source\")\n```\nor, using the R GUI by clicking on \"Packages \u0026 Data\" then \"Package installer\", then choosing \"local source\"\nfrom the dropdown menu, clicking \"install\", choosing CellNOptR.1.0.0.tar.gz\nand finally clicking \"open\".\n\n\n## Feedbacks, bug reports, features\nFeedbacks and bugreports are always very welcomed!  \nPlease use the Github issue page to report bugs or for questions: https://github.com/saezlab/CellNOptR/issues.\nMany thanks!\n\n## Code of Conduct\n  Please note that the CellNOptR project is released with a [Contributor Code of Conduct](http://bioconductor.org/about/code-of-conduct/). By contributing to this project, you agree to abide by its terms.\n  \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Fcellnoptr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsaezlab%2Fcellnoptr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Fcellnoptr/lists"}