{"id":24528966,"url":"https://github.com/saezlab/lianaplus_manuscript","last_synced_at":"2025-07-11T08:04:06.649Z","repository":{"id":191918527,"uuid":"618469562","full_name":"saezlab/lianaplus_manuscript","owner":"saezlab","description":null,"archived":false,"fork":false,"pushed_at":"2024-07-01T08:08:24.000Z","size":716529,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-06-14T17:05:19.406Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/saezlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-03-24T14:34:57.000Z","updated_at":"2024-12-30T07:26:22.000Z","dependencies_parsed_at":null,"dependency_job_id":"2c80d40e-dddc-4193-b04a-bfc2449d41d0","html_url":"https://github.com/saezlab/lianaplus_manuscript","commit_stats":null,"previous_names":["saezlab/lianaplus_manuscript"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/saezlab/lianaplus_manuscript","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Flianaplus_manuscript","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Flianaplus_manuscript/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Flianaplus_manuscript/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Flianaplus_manuscript/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/saezlab","download_url":"https://codeload.github.com/saezlab/lianaplus_manuscript/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/saezlab%2Flianaplus_manuscript/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":264763124,"owners_count":23660302,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-22T07:34:14.471Z","updated_at":"2025-07-11T08:04:06.588Z","avatar_url":"https://github.com/saezlab.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# LIANA+ Manuscript Repository\nThis repository contains the code and data for the LIANA+ manuscript. \n\nThe repository is organized as follows:\n- `data/`: contains the small metadata files used in the manuscript.\n- `notebooks/`: contains the notebooks used to generate the figures in the manuscript.\n- `environments/`: contains the conda environments used to run the notebooks.\n- `generate_source_table.py`: script to compile csvs from figures and supps into Supp Data.\n\nSee `notebooks\\README.md` for all dataset and analysis descriptions.\n\n## Cite LIANA+:\n\nDimitrov D., Schäfer P.S.L, Farr E., Rodriguez Mier P., Lobentanzer S., Dugourd A., Tanevski J., Ramirez Flores R.O. and Saez-Rodriguez J. 2023 LIANA+: an all-in-one cell-cell communication framework. BioRxiv. https://www.biorxiv.org/content/10.1101/2023.08.19.553863v1\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Flianaplus_manuscript","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsaezlab%2Flianaplus_manuscript","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Flianaplus_manuscript/lists"}