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The R/Bioconductor package ``OmnipathR`` you may find on `GitHub \u003chttps://github.com/saezlab/OmnipathR\u003e`_\nor in `Bioconductor \u003chttp://bioconductor.org/packages/3.12/bioc/html/OmnipathR.html\u003e`_.\nThe R client currently supports all features of the web service.\n\nCytoscape\n---------\nWe even have a `Cytoscape plug-in`_.\nWith the plug-in you are able to load networks into Cytoscape and access\ncertain (not all) annotations of the proteins.\n\n.. |PyPI| image:: https://img.shields.io/pypi/v/omnipath.svg\n    :target: https://pypi.org/project/omnipath\n    :alt: PyPI\n\n.. |Downloads| image:: https://pepy.tech/badge/omnipath\n    :target: https://pepy.tech/project/omnipath\n    :alt: Downloads\n\n.. |CI| image:: https://img.shields.io/github/actions/workflow/status/saezlab/omnipath/ci.yml?branch=master\n    :target: https://github.com/saezlab/omnipath/actions?query=workflow:CI\n    :alt: CI\n\n.. |Coverage| image:: https://codecov.io/gh/saezlab/omnipath/branch/master/graph/badge.svg\n    :target: https://codecov.io/gh/saezlab/omnipath\n    :alt: Coverage\n\n.. |Docs|  image:: https://img.shields.io/readthedocs/omnipath\n    :target: https://omnipath.readthedocs.io/en/latest\n    :alt: Documentation\n\n.. _website : https://omnipathdb.org/\n.. _Cytoscape plug-in : https://apps.cytoscape.org/apps/omnipath\n.. _pypath : https://github.com/saezlab/pypath\n.. _preprint : https://www.biorxiv.org/content/10.1101/2020.08.03.221242v2\n.. _paper from 2016 : https://www.nature.com/articles/nmeth.4077\n.. _supplementary material : https://static-content.springer.com/esm/art%3A10.1038%2Fnmeth.4077/MediaObjects/41592_2016_BFnmeth4077_MOESM495_ESM.pdf\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Fomnipath","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsaezlab%2Fomnipath","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Fomnipath/lists"}