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Also\navailable as a web service: https://utils.omnipathdb.org/\n\n## For most users: use omnipath-client\n\nIf you just want to translate IDs, resolve organisms, or access reference\nlists, install the lightweight client:\n\n```bash\npip install omnipath-client\n```\n\n```python\nfrom omnipath_client.utils import map_name, translate_column\nmap_name('TP53', 'genesymbol', 'uniprot')  # {'P04637'}\n```\n\nThe client queries the [utils.omnipathdb.org](https://utils.omnipathdb.org)\nweb service -- no database setup required, same API as the local package.\n\nInstall `omnipath-utils` directly only if you need to run the service\nlocally or build the database yourself.\n\n## Quick Start\n\n```python\nfrom omnipath_utils.mapping import map_name, map_names\nfrom omnipath_utils.taxonomy import ensure_ncbi_tax_id\nfrom omnipath_utils.reflists import is_swissprot\n\n# Translate gene symbol to UniProt\nmap_name('TP53', 'genesymbol', 'uniprot')\n# {'P04637', ...}\n\n# Translate multiple\nmap_names(['TP53', 'EGFR'], 'genesymbol', 'uniprot')\n# {'P04637', 'P00533', ...}\n\n# Resolve organism\nensure_ncbi_tax_id('human')   # 9606\nensure_ncbi_tax_id('hsapiens') # 9606\n\n# Check if reviewed\nis_swissprot('P04637')  # True\n```\n\n## Installation\n\n```bash\npip install omnipath-utils\n```\n\nWith database and web service:\n\n```bash\npip install \"omnipath-utils[server]\"\n```\n\n## Web Service\n\n```bash\nomnipath-utils build --organisms 9606\nomnipath-utils serve --port 8082\n```\n\n```bash\ncurl \"http://localhost:8082/mapping/translate?identifiers=TP53,EGFR\u0026id_type=genesymbol\u0026target_id_type=uniprot\"\n```\n\n## Documentation\n\nhttps://saezlab.github.io/omnipath-utils\n\n## License\n\nThe package is under the GNU GPLv3 license. This doesn't affect the web service\nand data, where each original resource carries its own license, and is\npotentially available for commercial use.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Fomnipath-utils","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsaezlab%2Fomnipath-utils","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsaezlab%2Fomnipath-utils/lists"}