{"id":17278293,"url":"https://github.com/samuel-marsh/sccustomize","last_synced_at":"2025-05-15T20:07:25.112Z","repository":{"id":41254469,"uuid":"411807769","full_name":"samuel-marsh/scCustomize","owner":"samuel-marsh","description":"R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.","archived":false,"fork":false,"pushed_at":"2025-04-24T19:41:49.000Z","size":320419,"stargazers_count":253,"open_issues_count":10,"forks_count":24,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-05-15T20:06:42.813Z","etag":null,"topics":["customization","ggplot2","scrna-seq","seurat","single-cell","single-cell-genomics","single-cell-rna-seq","visualization"],"latest_commit_sha":null,"homepage":"https://samuel-marsh.github.io/scCustomize/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/samuel-marsh.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-09-29T19:41:40.000Z","updated_at":"2025-05-06T16:03:03.000Z","dependencies_parsed_at":"2023-09-29T13:20:13.735Z","dependency_job_id":"270350ed-0554-4ab4-a73a-5de7acbc5dbd","html_url":"https://github.com/samuel-marsh/scCustomize","commit_stats":null,"previous_names":[],"tags_count":17,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuel-marsh%2FscCustomize","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuel-marsh%2FscCustomize/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuel-marsh%2FscCustomize/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/samuel-marsh%2FscCustomize/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/samuel-marsh","download_url":"https://codeload.github.com/samuel-marsh/scCustomize/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254414501,"owners_count":22067272,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["customization","ggplot2","scrna-seq","seurat","single-cell","single-cell-genomics","single-cell-rna-seq","visualization"],"created_at":"2024-10-15T09:11:19.518Z","updated_at":"2025-05-15T20:07:20.084Z","avatar_url":"https://github.com/samuel-marsh.png","language":"R","readme":"\n# scCustomize \u003cimg src=\"man/figures/scCustomize_Logo.svg\" align=\"right\" width=\"150\"/\u003e\n\n[![CRAN\nVersion](https://img.shields.io/cran/v/scCustomize?color=green\u0026label=CRAN)](https://cran.r-project.org/package=scCustomize)\n[![CRAN\nDownloads](https://cranlogs.r-pkg.org/badges/scCustomize)](https://cran.r-project.org/package=scCustomize)\n[![R-CMD-check](https://github.com/samuel-marsh/scCustomize/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/samuel-marsh/scCustomize/actions/workflows/R-CMD-check.yaml)\n[![license](https://img.shields.io/github/license/samuel-marsh/scCustomize)](https://github.com/samuel-marsh/scCustomize/blob/master/LICENSE.md)\n[![issues](https://img.shields.io/github/issues/samuel-marsh/scCustomize)](https://github.com/samuel-marsh/scCustomize/issues)\n[![DOI](https://img.shields.io/badge/DOI-10.5281/zenodo.5706430-blue)](https://doi.org/10.5281/zenodo.5706430)\n\nscCustomize is a collection of functions created and/or curated to aid\nin the visualization and analysis of single-cell data using R.\n\n## Vignettes/Tutorials\n\nSee accompanying [scCustomize\nwebsite](https://samuel-marsh.github.io/scCustomize/) for detailed\ntutorials of all aspects of scCustomize functionality.\n\n## Installing scCustomize\n\nscCustomize can be installed from\n[CRAN](https://cran.r-project.org/package=scCustomize) on all platforms.\nFor more detailed instructions see\n[Installation](https://samuel-marsh.github.io/scCustomize/articles/Installation.html).\n\n    # Base R\n    install.packages(\"scCustomize\")\n\n    # Using pak\n    pak::pkg_install(\"scCustomize\")\n\n## Release Notes\n\nA full copy of the changes in each version can be found in the\n[NEWS/ChangeLog](https://samuel-marsh.github.io/scCustomize/news/index.html).\n\n**Develop branch**  \nI also maintain a separate development branch\u003csup\u003e\\*\u003c/sup\u003e that can be\ninstalled by supplying `ref = \"develop\"` in the devtools or remotes\ninstallation command. Version scheme vX.X.X.9yyy.  \n\u003csup\u003e\\*\u003c/sup\u003e*Note: While this branch is typically mostly stable it may\ncontain breaking issues/bugs.*  \nI do try and keep [development\nChangeLog](https://github.com/samuel-marsh/scCustomize/blob/develop/NEWS.md)\nup to date so it’s easier to follow changes than reading commit history.\n\n## Bug Reports/New Features\n\n#### If you run into any issues or bugs please submit a [GitHub issue](https://github.com/samuel-marsh/scCustomize/issues) with details of the issue.\n\n- If possible please include a reproducible example (suggest using\n  [SeuratData package](https://github.com/satijalab/seurat-data) pbmc\n  dataset for lightweight examples.)\n\n#### Any requests for new features or enhancements can also be submitted as [GitHub issues](https://github.com/samuel-marsh/scCustomize/issues).\n\n- Even if you don’t know how to implement/incorporate with current\n  package go ahead a submit!\n\n#### [Pull Requests](https://github.com/samuel-marsh/scCustomize/pulls) are welcome for bug fixes, new features, or enhancements.\n\n- Please set PR to merge with “develop” branch and provide description\n  of what the PR contains (referencing existing issue(s) if\n  appropriate).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsamuel-marsh%2Fsccustomize","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsamuel-marsh%2Fsccustomize","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsamuel-marsh%2Fsccustomize/lists"}