{"id":22118047,"url":"https://github.com/sanderlab/3dseq","last_synced_at":"2025-07-25T12:31:25.299Z","repository":{"id":119465364,"uuid":"223235452","full_name":"sanderlab/3Dseq","owner":"sanderlab","description":null,"archived":false,"fork":false,"pushed_at":"2023-11-15T15:31:42.000Z","size":72,"stargazers_count":7,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-04-02T06:51:16.741Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sanderlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-11-21T18:11:43.000Z","updated_at":"2024-01-22T05:21:09.000Z","dependencies_parsed_at":"2023-11-15T16:46:50.422Z","dependency_job_id":null,"html_url":"https://github.com/sanderlab/3Dseq","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/sanderlab/3Dseq","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanderlab%2F3Dseq","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanderlab%2F3Dseq/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanderlab%2F3Dseq/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanderlab%2F3Dseq/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanderlab","download_url":"https://codeload.github.com/sanderlab/3Dseq/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanderlab%2F3Dseq/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267007438,"owners_count":24020257,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-25T02:00:09.625Z","response_time":70,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-01T13:43:14.594Z","updated_at":"2025-07-25T12:31:24.980Z","avatar_url":"https://github.com/sanderlab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# 3Dseq - analysis scripts\n\nThis repository contains scripts and jupyter notebooks used to analyze \nlaboratory evolution data, infer residue-residue interactions, and determine\n3-dimensional structure. The project is explained in detail in our recent\npublication:\n\n\u003eMichael A Stiffler\u003csup\u003e\u003csub\u003e\\*#\u003c/sub\u003e\u003c/sup\u003e,\n\u003eFrank J Poelwijk\u003csup\u003e\u003csub\u003e\\*#\u003c/sub\u003e\u003c/sup\u003e, \n\u003eKelly P Brock, \n\u003eRichard R Stein, \n\u003eAdam Riesselman, \n\u003eJoan Teyra, \n\u003eSachdev Sidhu, \n\u003eDebora S Marks, \n\u003eNicholas P Gauthier\u003csup\u003e\u003csub\u003e@#\u003c/sub\u003e\u003c/sup\u003e, \n\u003eChris Sander\u003csup\u003e\u003csub\u003e@#\u003c/sub\u003e\u003c/sup\u003e. (2019).\n\u003eProtein Structure from Experimental Evolution. \n\u003eCell Systems, *in press*.\n\u003e\n\u003e \\* Joint first authors \u003cbr\u003e\n\u003e @ Joint last authors \u003cbr\u003e\n\u003e \\# Email to [3Dseq.research@gmail.com](3Dseq.research@gmail.com) reaches the principal authors\n\n - See `README.md` or `README.txt` files for a description of the scripts in each folder.\n - Accessory files are available from [https://api.evcouplings.org/3Dseq/](https://api.evcouplings.org/3Dseq/)\n \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsanderlab%2F3dseq","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsanderlab%2F3dseq","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsanderlab%2F3dseq/lists"}