{"id":37070214,"url":"https://github.com/sanjaynagi/anoprimer","last_synced_at":"2026-01-14T08:11:18.518Z","repository":{"id":39002876,"uuid":"503315581","full_name":"sanjaynagi/AnoPrimer","owner":"sanjaynagi","description":"Primer Design in Anopheles gambiae and funestus considering genetic variation","archived":false,"fork":false,"pushed_at":"2025-09-25T11:35:14.000Z","size":14688,"stargazers_count":2,"open_issues_count":4,"forks_count":4,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-10-27T03:39:54.439Z","etag":null,"topics":["anopheles","cloud","malaria-genomics","primer-design","primer3-py","vector-control"],"latest_commit_sha":null,"homepage":"https://sanjaynagi.github.io/AnoPrimer/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sanjaynagi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-06-14T10:40:55.000Z","updated_at":"2025-09-25T11:34:26.000Z","dependencies_parsed_at":"2025-09-25T13:16:14.959Z","dependency_job_id":"3e271a4d-853e-4032-8af5-08537750b374","html_url":"https://github.com/sanjaynagi/AnoPrimer","commit_stats":null,"previous_names":["sanjaynagi/anoprimer"],"tags_count":22,"template":false,"template_full_name":null,"purl":"pkg:github/sanjaynagi/AnoPrimer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanjaynagi%2FAnoPrimer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanjaynagi%2FAnoPrimer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanjaynagi%2FAnoPrimer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanjaynagi%2FAnoPrimer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sanjaynagi","download_url":"https://codeload.github.com/sanjaynagi/AnoPrimer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanjaynagi%2FAnoPrimer/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28413601,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-14T05:26:33.345Z","status":"ssl_error","status_checked_at":"2026-01-14T05:21:57.251Z","response_time":107,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["anopheles","cloud","malaria-genomics","primer-design","primer3-py","vector-control"],"created_at":"2026-01-14T08:11:17.789Z","updated_at":"2026-01-14T08:11:18.502Z","avatar_url":"https://github.com/sanjaynagi.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cdiv align=\"center\"\u003e\n\n[\u003cimg src=\"https://github.com/sanjaynagi/AnoPrimer/blob/main/graphics/AnoPrimer_logo.png?raw=True\" width=\"400\"/\u003e](https://github.com/sanjaynagi/AnoPrimer/blob/main/graphics/AnoPrimer_logo.png?raw=True)\n\n[![DOI](https://zenodo.org/badge/503315581.svg)](https://zenodo.org/badge/latestdoi/503315581)\n[![Execute notebooks](https://github.com/sanjaynagi/AnoPrimer/workflows/Execute%20notebooks/badge.svg)](https://github.com/sanjaynagi/AnoPrimer/actions?query=workflow:\"Execute+notebook\")\n[![GitHub release](https://img.shields.io/github/release/sanjaynagi/AnoPrimer?include_prereleases=\u0026sort=semver\u0026color=blue)](https://github.com/sanjaynagi/AnoPrimer/releases/)\n[![License](https://img.shields.io/badge/License-MIT-blue)](#license)\n[![Twitter Follow](https://img.shields.io/twitter/follow/sanjay_c_nagi.svg?style=social)](https://twitter.com/sanjay_c_nagi)\n\n\u003c/div\u003e\n\nPrimer design in *Anopheles gambiae s.l* and *funestus* taking into account SNP variation in primer binding sites, using primer3-py and malariagen_data. Supports genomic DNA primers, cDNA primers and hybridisation probes:\n\u003cbr/\u003e\u003cbr/\u003e\n\u003cdiv align=\"center\"\u003e\n\nDocumentation: https://sanjaynagi.github.io/AnoPrimer/\n\n[![Custom badge](https://img.shields.io/endpoint?color=white\u0026logo=Google%20Colab\u0026url=https%3A%2F%2Fraw.githubusercontent.com%2Fsanjaynagi%2FAnoPrimer%2Fmain%2Fgraphics%2Fbadge.json)](https://colab.research.google.com/github/sanjaynagi/AnoPrimer/blob/main/notebooks/AnoPrimer-long.ipynb)\n\n [![Custom badge](https://img.shields.io/endpoint?color=red\u0026logo=Google%20Colab\u0026url=https%3A%2F%2Fraw.githubusercontent.com%2Fsanjaynagi%2FAnoPrimer%2Fmain%2Fgraphics%2Fbadge-short.json)](https://colab.research.google.com/github/sanjaynagi/AnoPrimer/blob/main/notebooks/AnoPrimer-short.ipynb)\n\n\u003c/div\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsanjaynagi%2Fanoprimer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsanjaynagi%2Fanoprimer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsanjaynagi%2Fanoprimer/lists"}