{"id":13857294,"url":"https://github.com/satijalab/seurat","last_synced_at":"2025-05-15T01:03:20.654Z","repository":{"id":32351958,"uuid":"35927665","full_name":"satijalab/seurat","owner":"satijalab","description":"R toolkit for single cell genomics","archived":false,"fork":false,"pushed_at":"2025-04-24T12:52:29.000Z","size":81679,"stargazers_count":2428,"open_issues_count":476,"forks_count":946,"subscribers_count":74,"default_branch":"main","last_synced_at":"2025-05-08T00:35:22.125Z","etag":null,"topics":["cran","human-cell-atlas","single-cell-genomics","single-cell-rna-seq"],"latest_commit_sha":null,"homepage":"http://www.satijalab.org/seurat","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/satijalab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-05-20T05:23:02.000Z","updated_at":"2025-05-06T05:57:36.000Z","dependencies_parsed_at":"2024-01-05T00:56:14.685Z","dependency_job_id":"b110e193-7598-48d5-86e8-9086eafe9b3b","html_url":"https://github.com/satijalab/seurat","commit_stats":{"total_commits":5089,"total_committers":111,"mean_commits":"45.846846846846844","dds":0.7757909215955984,"last_synced_commit":"57564e282a1ba54c655192d907d83df21164dc78"},"previous_names":[],"tags_count":44,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/satijalab%2Fseurat","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/satijalab%2Fseurat/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/satijalab%2Fseurat/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/satijalab%2Fseurat/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/satijalab","download_url":"https://codeload.github.com/satijalab/seurat/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254254040,"owners_count":22039792,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cran","human-cell-atlas","single-cell-genomics","single-cell-rna-seq"],"created_at":"2024-08-05T03:01:32.692Z","updated_at":"2025-05-15T01:03:20.610Z","avatar_url":"https://github.com/satijalab.png","language":"R","funding_links":[],"categories":["R","Table of Contents","Software packages"],"sub_categories":["Single-cell","RNA-seq"],"readme":"[![CRAN Version](https://www.r-pkg.org/badges/version/Seurat)](https://cran.r-project.org/package=Seurat)\n[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/Seurat)](https://cran.r-project.org/package=Seurat)\n\n\n# Seurat v5\n\nSeurat is an R toolkit for single cell genomics, developed and maintained by the Satija Lab at NYGC.\n\nWe are excited to release Seurat v5! This updates introduces new functionality for spatial, multimodal, and scalable single-cell analysis.\n\nSeurat v5 is backwards-compatible with previous versions, so that users will continue to be able to re-run existing workflows. \n\nInstructions, documentation, and tutorials can be found at:\n\n* https://satijalab.org/seurat\n\nSeurat is also hosted on GitHub, you can view and clone the repository at\n\n* https://github.com/satijalab/seurat\n\nSeurat has been successfully installed on Mac OS X, Linux, and Windows, using the devtools package to install directly from GitHub\n\nImprovements and new features will be added on a regular basis, please post on the [github page](https://github.com/satijalab/seurat) with any questions or if you would like to contribute\n\nFor a version history/changelog, please see the [NEWS file](https://github.com/satijalab/seurat/blob/master/NEWS.md).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsatijalab%2Fseurat","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsatijalab%2Fseurat","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsatijalab%2Fseurat/lists"}