{"id":19252360,"url":"https://github.com/sccn/app-test-nemar","last_synced_at":"2025-07-16T06:44:14.603Z","repository":{"id":115394156,"uuid":"415058952","full_name":"sccn/app-test-NEMAR","owner":"sccn","description":"Example NEMAR pipeline","archived":false,"fork":false,"pushed_at":"2022-01-26T17:43:19.000Z","size":75381,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-02T17:00:05.790Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sccn.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-10-08T16:37:10.000Z","updated_at":"2022-01-11T01:50:10.000Z","dependencies_parsed_at":"2023-03-13T13:02:42.016Z","dependency_job_id":null,"html_url":"https://github.com/sccn/app-test-NEMAR","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/sccn/app-test-NEMAR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sccn%2Fapp-test-NEMAR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sccn%2Fapp-test-NEMAR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sccn%2Fapp-test-NEMAR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sccn%2Fapp-test-NEMAR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sccn","download_url":"https://codeload.github.com/sccn/app-test-NEMAR/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sccn%2Fapp-test-NEMAR/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265489095,"owners_count":23775251,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T18:26:34.750Z","updated_at":"2025-07-16T06:44:14.558Z","avatar_url":"https://github.com/sccn.png","language":"MATLAB","funding_links":[],"categories":[],"sub_categories":[],"readme":"# app-test-NEMAR\nExample NEMAR pipeline\n\nTo test:\n```\ngit clone https://github.com/dungscout96/app-test-NEMAR.git\ncd app-test-NEMAR\n./main\n```\n\nThe pipeline runs on a Docker container via Singularity. \n\n## Files\n- `main`: the entrypoint script\n- `config-dataqual.json`: specifying path to BIDS dataset on and datasetID\n- `bids_dataqual.m`: main pipeline script\n\n## Docker execution\n\nA simple docker application running Octave and some EEGLAB scripts. See also an older project https://github.com/sccn/nemar_tool_proof_of_concept\n\nUsage\n```\n$ docker build --tag=octavedock13 .\n$ docker run --rm -it octavedock13\n$ # Then at the Octave prompt, install the signal processing toolbox (this should really be done in the Docker file)\n$ pkg install -forge control\n$ pkg install -forge signal\n$ pkg load signal\n$ # Then run script\n$ ./main\n```\n\nRun the script file directly (for a modified version that would include the signal processing toolbox)\n\n```\n$ docker run --rm -it octavedock script_test.m arg1  # Run the example file\n```\n\n## What to save\n- ICA component maps in SVG format\n- Spectrum in SVG format\n- Figure in SVG format \n- Generate SVG format from Matlab and show it in the page\n\n## BIDS derivative\n- Are the generated processed datasets compatible with BIDS derivative\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsccn%2Fapp-test-nemar","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsccn%2Fapp-test-nemar","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsccn%2Fapp-test-nemar/lists"}