{"id":24313589,"url":"https://github.com/sciencegenome/bedtools-multipangenome","last_synced_at":"2025-06-20T07:38:49.646Z","repository":{"id":271298301,"uuid":"912976150","full_name":"sciencegenome/bedtools-multipangenome","owner":"sciencegenome","description":"rust bedtools multi-pangenome call","archived":false,"fork":false,"pushed_at":"2025-01-15T20:56:32.000Z","size":3776,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-17T09:12:22.165Z","etag":null,"topics":["algorithm-bioinformatics","bedtools","genome-analysis","metagenomics","pangenome","pangenome-alignment","rust-lang"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sciencegenome.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-01-06T19:23:57.000Z","updated_at":"2025-01-15T21:12:06.000Z","dependencies_parsed_at":"2025-01-06T21:31:30.672Z","dependency_job_id":"5e5ed8a3-3a28-45b6-94d6-b38eed7970e3","html_url":"https://github.com/sciencegenome/bedtools-multipangenome","commit_stats":null,"previous_names":["applicativesystem/rust-bedtools-multipangenome","sciencegenome/rust-bedtools-multipangenome","sciencegenome/bedtools-multipangenome"],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fbedtools-multipangenome","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fbedtools-multipangenome/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fbedtools-multipangenome/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciencegenome%2Fbedtools-multipangenome/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sciencegenome","download_url":"https://codeload.github.com/sciencegenome/bedtools-multipangenome/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":234338056,"owners_count":18816450,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["algorithm-bioinformatics","bedtools","genome-analysis","metagenomics","pangenome","pangenome-alignment","rust-lang"],"created_at":"2025-01-17T09:12:28.897Z","updated_at":"2025-01-17T09:12:31.404Z","avatar_url":"https://github.com/sciencegenome.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# rust-bedtools-multipangenome\n - rust bedtools multi-pangenome. \n - analyzes the multiple pangenome alignments of the same query to the multiple reference genomes\n - limits the longest alignment search to the longest alignment.  \n - build a ancestral sequence based on the longest alignment. \n - please see the last commit message and if it says compiled binary then it is completed or else still in development version.\n\n\n  ```\n  cargo build \n  ```\n\n  ```\n  Usage: rust-bedtools-multipangenome \u003cALIGNMENT\u003e \u003cFASTAFILE\u003e \u003cPATHPRANK\u003e\n\n  Arguments:\n  \u003cALIGNMENT\u003e  please provide the path to the first alignment file\n  \u003cFASTAFILE\u003e  please provide the reference fasta file\n  \u003cPATHPRANK\u003e  please provide the path to the prank for the ancestal state\n\n  Options:\n  -h, --help     Print help\n  -V, --version  Print version\n\n  ```\n  - to run the binary\n  ```\n  ./rust-bedtools-multipangenome \\ \n      ./sample-files/sample.bed \\\n         ./sample-files/sample.fasta \\ \n                 ./prank \\\n  ```\n\n  Gaurav Sablok\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsciencegenome%2Fbedtools-multipangenome","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsciencegenome%2Fbedtools-multipangenome","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsciencegenome%2Fbedtools-multipangenome/lists"}