{"id":24611305,"url":"https://github.com/sciencegenome/python-candida-ontology-network","last_synced_at":"2025-06-13T23:36:30.215Z","repository":{"id":262142558,"uuid":"845680619","full_name":"IBCHgenomic/python-candida-ontology-network","owner":"IBCHgenomic","description":"analyzing candida ontology terms for network 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ontoloty-network-candida\n\n- i coded this a faster implementation of the gene ontology analyzer for the candida genomes, given the candida go ontology files and a search GO term, it extracts all the alt_id,  relationship_ids and associated function with those  gene ontology for the network analysis and to link with  the expression analysis.\n- This is a test ontology term, you can use any ontology term that you are interested in for making your expression networks.\n- The reason, why i coded this, is that if i look at the candida genome database, i was not able to find the associated gene ontologies associated with a specific ontology that i can plot along with the expression into a directed acyclic graph, so i coded this and given an ontology term and the gene ontology file, it will give you all the associated IDs as well as the function.\n- The ids can be directly used as a iterable in the network analysis to plot along with the expression as edges and nodes.\n\n```\ncandidaGORelationAnalyzer(\"/Users/gauravsablok/Desktop/CodeCheck/broad/goslim_candida.obo\",\n                         go_search=\"GO:0042493\")\n['GO:0042493',\n 'alt_id: GO:0017035',\n 'GO:0042493',\n 'is_a: GO:0042221 | response to chemical']\n```\nGaurav Sablok \\\nUniversity of Potsdam \\\nPotsdam,Germany \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsciencegenome%2Fpython-candida-ontology-network","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsciencegenome%2Fpython-candida-ontology-network","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsciencegenome%2Fpython-candida-ontology-network/lists"}