{"id":49628624,"url":"https://github.com/scientificcomputing/example-paper","last_synced_at":"2026-05-05T09:06:37.713Z","repository":{"id":152688856,"uuid":"564316164","full_name":"scientificcomputing/example-paper","owner":"scientificcomputing","description":"Example of paper with code","archived":false,"fork":false,"pushed_at":"2026-04-21T06:07:50.000Z","size":425,"stargazers_count":5,"open_issues_count":0,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-04-21T08:16:16.890Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://scientificcomputing.github.io/example-paper/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/scientificcomputing.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-11-10T13:06:34.000Z","updated_at":"2026-04-21T06:07:52.000Z","dependencies_parsed_at":"2025-04-11T09:58:01.975Z","dependency_job_id":"ff388eb0-699a-478d-9cab-6c4ec40f2e2c","html_url":"https://github.com/scientificcomputing/example-paper","commit_stats":null,"previous_names":[],"tags_count":4,"template":true,"template_full_name":null,"purl":"pkg:github/scientificcomputing/example-paper","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scientificcomputing%2Fexample-paper","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scientificcomputing%2Fexample-paper/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scientificcomputing%2Fexample-paper/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scientificcomputing%2Fexample-paper/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/scientificcomputing","download_url":"https://codeload.github.com/scientificcomputing/example-paper/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scientificcomputing%2Fexample-paper/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32642362,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-04T10:08:07.713Z","status":"online","status_checked_at":"2026-05-05T02:00:06.033Z","response_time":54,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-05-05T09:06:35.999Z","updated_at":"2026-05-05T09:06:37.703Z","avatar_url":"https://github.com/scientificcomputing.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Supplementary code for the paper: Title of paper\n[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/scientificcomputing/example-paper/HEAD)\n\nThis repository contains supplementary code for the paper\n\u003e Finsberg, H., Dokken, J. 2022.\n\u003e Title of paper, Journal of ..., volume, page, url\n\n\n## Abstract\nProvide the abstract of the paper\n\n## Getting started\n\nFirst install `uv`\n```bash\ncurl -LsSf https://astral.sh/uv/install.sh | sh\n```\nThen create a virtual environment and install dependencies\n\n```bash\nuv venv\nsource .venv/bin/activate\nuv sync --locked --all-extras --dev\n```\n\nWe also provide a pre-build Docker image which can be used to run the the code in this repository. First thing you need to do is to ensure that you have [docker installed](https://docs.docker.com/get-docker/).\n\nTo start an interactive docker container you can execute the following command\n\n```bash\ndocker run --rm -it ghcr.io/scientificcomputing/example-paper:latest\n```\n\n### Pre-processing\nAdd steps for pre-processing, e.g\n\n```\ncd code\npython3 pre-processing.py\n```\n\n### Running simulation\nAdd steps for running simulations, e.g\n\n```\ncd code\npython3 run_all.py\n```\n\n\n### Postprocessing\nAdd steps for postprocessing / reproducing figures and tables in the paper, e.g\n\n```\ncd code\npython3 postprocess.py\n```\n\n## Citation\n\n```\n@software{Lisa_My_Research_Software_2017,\n  author = {Lisa, Mona and Bot, Hew},\n  doi = {10.5281/zenodo.1234},\n  month = {12},\n  title = {{My Research Software}},\n  url = {https://github.com/scientificcomputing/example-paper},\n  version = {2.0.4},\n  year = {2017}\n}\n```\n\n\n## Having issues\nIf you have any troubles please file and issue in the GitHub repository.\n\n## License\nMIT\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscientificcomputing%2Fexample-paper","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fscientificcomputing%2Fexample-paper","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscientificcomputing%2Fexample-paper/lists"}