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spack_repos\n\nSpack-repositories hosted by Scientific Computing, following: https://spack.readthedocs.io/en/latest/repositories.html\n\nClone and activate spack\n\n```bash\n. spack/share/spack/setup-env.sh\n```\n\nCreate and activate a spack env\n\n```bash\nspack env create name-of-env\nspack env activate name-of-env\n```\n\nTo use the packages in this repo, add the `FEniCS` spack repos\n\n```bash\nspack repo add https://github.com/FEniCS/spack-fenics.git\n```\n\nthen add this repository\n\n```bash\nspack repo add https://github.com/scientificcomputing/spack_repos.git\n```\n\nor clone it and add it\n\n```bash\ngit clone https://github.com/scientificcomputing/spack_repos.git\nspack repo add spack_repos/spack_repo/scientificcomputing\n\n```\n\nThen for instance add `pyscifem`\n\n```bash\nspack add py-scifem@0.16\n```\n\nFinally you can install the dependencies by first calling \n```\nspack concretize\n```\nto resolve the potentially conflicting dependencies, and then install the packages with\n```\nspack install -j \u003cnumber of cores\u003e\n```\ne.g\n```\nspack install -j 4\n```\n\n\n## Available packages\n\nThe following packages are currently available in this repository:\n- [x] [adios4dolfinx](https://github.com/jorgensd/adios4dolfinx)\n- [ ] [ap_features](https://github.com/ComputationalPhysiology/ap_features)\n- [ ] [dolfinx-mpc](https://github.com/jorgensd/dolfinx_mpc)\n- [x] [cardiac-geometriesx](https://github.com/ComputationalPhysiology/cardiac-geometriesx)\n- [x] [circulation](https://github.com/ComputationalPhysiology/circulation)\n- [x] [fenicsx-beat](https://github.com/finsberg/fenicsx-beat)\n- [x] [fenicsx-ldrb](https://github.com/finsberg/fenicsx-ldrb)\n- [x] [fenicsx-pulse](https://github.com/finsberg/fenicsx-pulse)\n- [ ] [fenicsx-warp](https://github.com/ComputationalPhysiology/fenicsx-warp)\n- [ ] [fenicsx-ii](https://github.com/scientificcomputing/fenicsx_ii)\n- [x] [festim](https://github.com/festim-dev/FESTIM)\n- [x] [gotranx](https://github.com/finsberg/gotranx)\n- [x] [io4dolfinx](https://github.com/scientificcomputing/io4dolfinx)\n- [x] [mri-toolkit](https://github.com/scientificcomputing/mri-toolkit)\n- [x] [mri2mesh](https://github.com/scientificcomputing/mri2mesh)\n- [x] [networks-fenicsx](https://github.com/scientificcomputing/networks-fenicsx)\n- [x] [scifem](https://github.com/scientificcomputing/scifem)\n- [x] [ukb-atlas](https://github.com/ComputationalPhysiology/ukb-atlas)\n\nIf you see a package that is missing, please submit an [issue](https://github.com/scientificcomputing/spack_repos/issues/new?template=package.yml)\n\n## How to guides\n\n\n### Checking out a specific version of a package\n\nIf you want to check out a specific branch, create new version, or edit an existing version of a package, you can use the `spack edit \u003cname of package\u003e` command, e.g\n```\nspack edit py-scifem\n```\nThis will open the package.py file in your default editor, where you can make the necessary changes, for example say you want to check out a branch called `feature-x` you can add the following to the `version` section of the package.py file\n```python\nversion(\"X.Y.Z.dev0\", branch=\"feature-x\")\n```\nwhere X.Y.Z is the latest release, and then use `spack add \u003cname of package\u003e@X.Y.Z.dev0`, e.g `spack add py-scifem@X.Y.Z.dev0` to add that specific branch to your spack environment. If you have an existing environment you can edit the config file using \n```\nspack config edit\n```\nNext run \n```\nspack concretize --fresh --force\n```\nand then \n```\nspack install -j \u003cnumber of cores\u003e\n```\n\n\n## Contributing\nWe welcome contributions to this project! If you have a new package or you want to improve the existing ones, please follow the steps in [CONTRIBUTING.md](CONTRIBUTING.md).\n\n## License\nThis project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscientificcomputing%2Fspack_repos","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fscientificcomputing%2Fspack_repos","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscientificcomputing%2Fspack_repos/lists"}