{"id":24610977,"url":"https://github.com/scilifelabdatacentre/dds_cli","last_synced_at":"2025-05-06T19:13:09.553Z","repository":{"id":37973852,"uuid":"211086884","full_name":"ScilifelabDataCentre/dds_cli","owner":"ScilifelabDataCentre","description":"The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data 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  \u003ch1 align=\"center\"\u003eData Delivery System: CLI\u003c/h1\u003e\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n    \u003cb\u003eA command line tool `dds` to manage projects and data in the SciLifeLab Data Delivery System.\u003c/b\u003e\n\u003c/p\u003e\n\u003cbr /\u003e\n\n\u003cp align=\"center\"\u003e\n\u003cimg alt=\"Release\" src=\"https://img.shields.io/github/v/release/SciLifeLabDataCentre/dds_cli\"\u003e\n\u003ca href=\"https://pypi.org/project/dds-cli/\"\u003e\n    \u003cimg alt=\"Install from PyPi\" src=\"https://img.shields.io/badge/install%20with-PyPI-blue.svg?logo=pypi\"\u003e\n\u003c/a\u003e\n\u003ca href=\"https://opensource.org/licenses/MIT\"\u003e\n    \u003cimg alt=\"Licence: MIT\" src=\"https://img.shields.io/badge/License-MIT-yellow.svg\"\u003e\n\u003c/a\u003e\n\u003ca href=\"[https://opensource.org/licenses/MIT](https://github.com/psf/black)\"\u003e\n    \u003cimg alt=\"Code style: black\" src=\"https://img.shields.io/badge/code%20style-black-000000.svg\"\u003e\n\u003c/a\u003e\n\u003ca href=\"https://prettier.io/\"\u003e\n    \u003cimg alt=\"Code style: prettier\" src=\"https://img.shields.io/badge/code_style-prettier-ff69b4.svg\"\u003e\n\u003c/a\u003e\n\u003cbr /\u003e\n\u003ca href=\"https://github.com/ScilifelabDataCentre/dds_cli/actions/workflows/lint-black-cli.yml\"\u003e\n    \u003cimg alt=\"Formatter: black\" src=\"https://github.com/ScilifelabDataCentre/dds_cli/actions/workflows/lint-black-cli.yml/badge.svg?event=push\"\u003e\n\u003c/a\u003e\n\u003cimg alt=\"CodeQL\" src=\"https://github.com/ScilifelabDataCentre/dds_cli/actions/workflows/codeql-cli.yml/badge.svg\"\u003e\n\u003ca href=\"https://codecov.io/github/ScilifelabDataCentre/dds_cli\" \u003e \n \u003cimg src=\"https://codecov.io/github/ScilifelabDataCentre/dds_cli/graph/badge.svg?token=zsrDpNqs6v\"/\u003e \n \u003c/a\u003e\n\u003cimg alt=\"Tests\" src=\"https://github.com/ScilifelabDataCentre/dds_cli/actions/workflows/pytest-cli.yml/badge.svg\"\u003e\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n\u003cb\u003eLinks\u003c/b\u003e\n\u003cbr /\u003e\n\u003ca href=\"https://scilifelabdatacentre.github.io/dds_cli/\"\u003e\n    \u003cimg alt=\"Documentation\" src=\"https://img.shields.io/badge/-Documentation-222222?logo=github-pages\"\u003e\n\u003c/a\u003e\n\u003ca href=\"https://github.com/ScilifelabDataCentre/dds_web/blob/master/doc/Technical-Overview.pdf\"\u003e\n    \u003cimg alt=\"Technical Overview\" src=\"https://img.shields.io/badge/-Technical%20Overview-informational?logo=github\"\u003e\n\u003c/a\u003e\n\u003ca href=\"https://github.com/ScilifelabDataCentre/dds_web/wiki/Architecture-Decision-Record,-ADR\"\u003e\n    \u003cimg alt=\"Architecture Decision Record\" src=\"https://img.shields.io/badge/-ADR-000000?logo=github\"\u003e\n\u003c/a\u003e\n\u003ca href=\"https://github.com/ScilifelabDataCentre/dds_web/blob/master/doc/Troubleshooting.pdf\"\u003e\n    \u003cimg alt=\"Troubleshooting\" src=\"https://img.shields.io/badge/-Troubleshooting%20Guide-red?logo=github\"\u003e\n\u003c/a\u003e\n\u003ca href=\"https://github.com/ScilifelabDataCentre/dds_web\"\u003e\n    \u003cimg alt=\"CLI\" src=\"https://img.shields.io/badge/-Web / API-yellow?logo=github\"\u003e\n\u003c/a\u003e\n\u003c/p\u003e\n\n## About\n\n**The Data Delivery System (DDS) is a cloud-based system for all SciLifeLab platforms where data generated throughout each project can be delivered to the research groups in a fast, secure and simple way. The CLI makes requests to the API (see badge below for link) in order to use the API functionality.**\n\n\u003e _The Data Delivery System is developed and maintained by the SciLifeLab Data Centre. National Genomics Infrastructure (NGI) Stockholm has been a part of the development team during 2021 and early 2022._\n\n---\n\n## Table of contents\n\n- [Installation](#installation)\n- [Overview of commands](#overview-of-commands)\n\n## Installation\n\n### Python Package Index\n\nThe `dds-cli` package can be installed from [PyPI](https://pypi.python.org/pypi/dds_cli/) using pip as follows:\n\n```bash\npip install --upgrade dds-cli\n```\n\nAfter installing, run `dds` (or `dds --help`) and verify that the output looks like this:\n\n![dds help command](img/dds-help-1.svg)\n\n### Executables\n\nExecutables are available for Windows, MacOS and Linux. These allow you to run the CLI without needing to install it (and the pip / Python requirements) yourself. Download them from the (bottom of the) latest release page: [Latest Release](https://github.com/ScilifelabDataCentre/dds_cli/releases/latest/)\n\n### Development version\n\nIf you would like the latest development version of tools, the command is:\n\n```bash\npip install --upgrade --force-reinstall git+https://github.com/ScilifelabDataCentre/dds_cli.git@dev\n```\n\nIf you intend to make edits to the code, first make a fork of the repository and then clone it locally.\nGo to the cloned directory and install with pip (also installs development requirements):\n\n```bash\npip install --upgrade -r requirements-dev.txt -e .\n```\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscilifelabdatacentre%2Fdds_cli","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fscilifelabdatacentre%2Fdds_cli","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscilifelabdatacentre%2Fdds_cli/lists"}