{"id":30878184,"url":"https://github.com/sciris/sciris","last_synced_at":"2025-09-08T05:04:22.499Z","repository":{"id":23824492,"uuid":"99168619","full_name":"sciris/sciris","owner":"sciris","description":"Fast, flexible tools to simplify scientific Python","archived":false,"fork":false,"pushed_at":"2025-08-06T19:29:34.000Z","size":14345,"stargazers_count":39,"open_issues_count":26,"forks_count":13,"subscribers_count":9,"default_branch":"main","last_synced_at":"2025-09-01T19:04:43.233Z","etag":null,"topics":["computational-science","containers","data-science","matplotlib","numpy","parallelization","plotting","python","scientific-computing","utilities"],"latest_commit_sha":null,"homepage":"http://docs.sciris.org","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sciris.png","metadata":{"files":{"readme":"README.rst","changelog":"CHANGELOG.rst","contributing":"CONTRIBUTING.rst","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.rst","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-08-02T23:11:29.000Z","updated_at":"2025-07-13T03:42:20.000Z","dependencies_parsed_at":"2023-12-30T10:32:38.624Z","dependency_job_id":"93329d96-3a20-4ca5-a78f-242bb4ad0061","html_url":"https://github.com/sciris/sciris","commit_stats":{"total_commits":2159,"total_committers":15,"mean_commits":"143.93333333333334","dds":"0.19036591014358495","last_synced_commit":"1aa401005bf796452c62ba5cebc2e91eaeefb9af"},"previous_names":[],"tags_count":33,"template":false,"template_full_name":null,"purl":"pkg:github/sciris/sciris","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciris%2Fsciris","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciris%2Fsciris/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciris%2Fsciris/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciris%2Fsciris/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sciris","download_url":"https://codeload.github.com/sciris/sciris/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sciris%2Fsciris/sbom","scorecard":{"id":804915,"data":{"date":"2025-08-11","repo":{"name":"github.com/sciris/sciris","commit":"a7d041899c4b0521167e6ce77e89b205b007f102"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.8,"checks":[{"name":"Maintained","score":10,"reason":"30 commit(s) and 29 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/2 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/pypi_release.yaml:1","Warn: no topLevel permission defined: .github/workflows/schedule_tests.yaml:1","Warn: no topLevel permission defined: .github/workflows/test_downstream.yaml:1","Warn: no topLevel permission defined: .github/workflows/test_sciris.yaml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi_release.yaml:11: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/pypi_release.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi_release.yaml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/pypi_release.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi_release.yaml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/pypi_release.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi_release.yaml:41: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/pypi_release.yaml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pypi_release.yaml:46: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/pypi_release.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:24: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:33: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:50: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:69: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:70: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:79: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:96: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:115: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:116: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:125: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:142: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:161: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:162: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:171: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_downstream.yaml:187: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_downstream.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_sciris.yaml:28: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_sciris.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_sciris.yaml:29: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_sciris.yaml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_sciris.yaml:42: update your workflow using https://app.stepsecurity.io/secureworkflow/sciris/sciris/test_sciris.yaml/main?enable=pin","Warn: pipCommand not pinned by hash: docs/freeze_env:20","Warn: pipCommand not pinned by hash: docs/freeze_env:21","Warn: pipCommand not pinned by hash: tests/regression/setup_envs:16","Warn: pipCommand not pinned by hash: tests/regression/setup_envs:17","Warn: pipCommand not pinned by hash: .github/workflows/pypi_release.yaml:20","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:123","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:133","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:137","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:169","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:179","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:182","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:31","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:41","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:45","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:77","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:87","Warn: pipCommand not pinned by hash: .github/workflows/test_downstream.yaml:91","Warn: pipCommand not pinned by hash: .github/workflows/test_sciris.yaml:35","Warn: pipCommand not pinned by hash: .github/workflows/test_sciris.yaml:38","Info:   0 out of  23 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   1 third-party GitHubAction dependencies pinned","Info:   0 out of  19 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/pypi_release.yaml:28"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":6,"reason":"4 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2021-387 / GHSA-j8fq-86c5-5v2r","Warn: Project is vulnerable to: PYSEC-2019-156 / GHSA-xp76-357g-9wqq","Warn: Project is vulnerable to: PYSEC-2023-102","Warn: Project is vulnerable to: PYSEC-2023-114"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-23T11:30:30.371Z","repository_id":23824492,"created_at":"2025-08-23T11:30:30.371Z","updated_at":"2025-08-23T11:30:30.371Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273501981,"owners_count":25117095,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["computational-science","containers","data-science","matplotlib","numpy","parallelization","plotting","python","scientific-computing","utilities"],"created_at":"2025-09-08T05:02:09.505Z","updated_at":"2025-09-08T05:04:22.479Z","avatar_url":"https://github.com/sciris.png","language":"Python","readme":"Welcome to Sciris\n=================\n\n.. image:: https://badgen.net/pypi/v/sciris/?color=blue\n :target: https://pypi.org/project/sciris\n\n.. image:: https://static.pepy.tech/personalized-badge/sciris?period=total\u0026units=international_system\u0026left_color=grey\u0026right_color=yellow\u0026left_text=Downloads\n :target: https://pepy.tech/project/sciris\n\n.. image:: https://img.shields.io/pypi/l/sciris.svg\n :target: https://github.com/sciris/sciris/blob/main/LICENSE\n\n.. image:: https://github.com/sciris/sciris/actions/workflows/test_sciris.yaml/badge.svg\n :target: https://github.com/sciris/sciris/actions/workflows/test_sciris.yaml?query=workflow\n\n\nWhat is Sciris?\n---------------\n\nSciris is a library of tools that can help make writing scientific Python code easier and more pleasant. Built on top of `NumPy \u003chttps://numpy.org/\u003e`_ and `Matplotlib \u003chttps://matplotlib.org/\u003e`_, Sciris provides functions covering a wide range of common math, file I/O, and plotting operations. This means you can get more done with less code, so you can spend less time looking up answers on Stack Overflow or copy-pasting dubious solutions from ChatGPT. It was originally written to help epidemiologists and neuroscientists focus on doing science, rather than on writing code, but Sciris is applicable across scientific domains (and some nonscientific ones too).\n\nFor more information, see the full `documentation \u003chttps://docs.sciris.org/en/latest/overview.html\u003e`_, the `paper \u003chttp://paper.sciris.org\u003e`_, or `GitHub \u003chttps://github.com/sciris/sciris\u003e`_.\n\nIf you have questions, feature suggestions, or would like some help getting started, please reach out to us at info@sciris.org or `open an issue \u003chttps://github.com/sciris/sciris/issues/new/choose\u003e`_.\n\n\nInstallation\n------------\n\nUsing pip: ``pip install sciris``\n\nUsing conda: ``conda install -c conda-forge sciris``\n\nUsing uv: ``uv add sciris``\n\n*Requires Python \u003e= 3.7*.\n\n\nTests\n-----\n\nSciris comes with an automated test suite covering all functions. You almost certainly don't need to run these, but if you want to, go to the ``tests`` folder and run ``pytest``. See the readme in that folder for more information.","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsciris%2Fsciris","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsciris%2Fsciris","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsciris%2Fsciris/lists"}