{"id":29303549,"url":"https://github.com/scverse/202503_hackathon_owkin","last_synced_at":"2025-07-07T01:09:03.322Z","repository":{"id":281389004,"uuid":"943847157","full_name":"scverse/202503_hackathon_owkin","owner":"scverse","description":"Repository to organise the shared hackathon with Owkin in Paris","archived":false,"fork":false,"pushed_at":"2025-03-16T17:01:16.000Z","size":4346,"stargazers_count":2,"open_issues_count":15,"forks_count":2,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-03-16T18:39:38.918Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/scverse.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-03-06T11:11:47.000Z","updated_at":"2025-03-16T17:01:20.000Z","dependencies_parsed_at":"2025-03-08T19:31:26.224Z","dependency_job_id":null,"html_url":"https://github.com/scverse/202503_hackathon_owkin","commit_stats":null,"previous_names":["scverse/202503_hackathon_owkin"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/scverse/202503_hackathon_owkin","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scverse%2F202503_hackathon_owkin","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scverse%2F202503_hackathon_owkin/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scverse%2F202503_hackathon_owkin/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scverse%2F202503_hackathon_owkin/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/scverse","download_url":"https://codeload.github.com/scverse/202503_hackathon_owkin/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/scverse%2F202503_hackathon_owkin/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263996091,"owners_count":23541402,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-07-07T01:09:00.424Z","updated_at":"2025-07-07T01:09:03.309Z","avatar_url":"https://github.com/scverse.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# scverse x Owkin Hackathon 2025\n\nWelcome to the scverse Hackathon 2025 organized in collaboration with [Owkin](https://www.owkin.com)! This repository is your central hub for all hackathon resources including workstreams, data tutorials, event details, and participation guidelines.\n\n---\n\n## Table of Contents\n\n- [scverse x Owkin Hackathon 2025](#scverse-x-owkin-hackathon-2025)\n  - [Table of Contents](#table-of-contents)\n  - [Overview](#overview)\n  - [Event Details](#event-details)\n  - [Schedule](#schedule)\n  - [How to Participate](#how-to-participate)\n  - [Workstreams](#workstreams)\n  - [Data \\\u0026 Tutorials](#data--tutorials)\n  - [Important Information](#important-information)\n  - [Communication](#communication)\n  - [Contact](#contact)\n\n---\n\n## Event Details\n\n- **Dates:** Monday, 2025-03-17 09:00 to Wednesday, 2025-03-19 12:30\n- **Location:** Owkin Office, 14/16 boulevard Poissonnière, Paris, France\n- **Access:** Upon arrival, please check in at the reception.\n- **What to Bring:**\n  - Your own laptop and charger (extension cords will be provided).  \n  - Remember to bring an adapter if needed (France uses type E power sockets).\n\n---\n\n## Schedule\n\n*Note: Schedule subject to minor adjustments.*\n\n| Date                       | Time            | Activity                               |\n|----------------------------|-----------------|----------------------------------------|\n| **Monday, March 17, 2025** | 09:00 – 09:30   | Breakfast on Owkin                     |\n|                            | 09:30 – 10:00   | scverse Introduction                   |\n|                            | 10:00 – 10:30   | Owkin Introduction                     |\n|                            | 10:30 – 10:45   | Kick-off                               |\n|                            | 10:45 – 12:00   | Hack Session                           |\n|                            | 12:00 – 14:00   | Lunch on Owkin / Continued Hack        |\n|                            | 14:00 – 18:00   | Hack Session                           |\n|                            | 18:00 – 20:00   | Afterwork @Owkin                       |\n|                            |                 |                                        |\n| **Tuesday, March 18, 2025**| 09:00 – 09:30   | Breakfast on Owkin                     |\n|                            | 09:30 – 12:00   | Hack Session                           |\n|                            | 12:00 – 14:00   | Lunch on Owkin / Continued Hack        |\n|                            | 14:00 – 18:00   | Hack Session                           |\n|                            | 18:00 – 20:00   | Afterwork @ [Bianca](https://maps.app.goo.gl/paTs1PoTaLMpGFsJ9) |\n|                            |                 |                                        |\n| **Wednesday, March 19, 2025**| 09:00 – 09:30 | Breakfast on Owkin                     |\n|                            | 09:30 – 11:00   | Hack Session                           |\n|                            | 11:00 – 12:30   | Team Updates \u0026 End of Event            |\n\n\n---\n\n## How to Participate\n\n1. **Explore Workstreams:**  \n   Check out the challenges (workstreams) detailed as [GitHub issues in this repository](https://github.com/scverse/202503_hackathon_owkin/issues).\n\n2. **Claim a Workstream:**  \n   Indicate on which project you want to work by writing your name in the respective column in this [Google Sheet](https://docs.google.com/spreadsheets/d/1f8i7c4cuFnUof2_-dPTYoTEVhK4i5flWGV2vGViLvsE/edit?gid=0#gid=0).\n\n3. **Develop Your Solution:**  \n   Use your preferred tools and techniques to bring your innovative ideas to life.\n\n4. **Discuss with your peers and have fun:**  \n   Hackathons are not purely about lines-of-code, but also intellectual exchange. We highly encourage you to discuss your ideas with your peers.\n\n5. **Please abide by the [Code of Conduct](https://scverse.org/about/code_of_conduct).**\n\n---\n\n## Workstreams\n\nOur GitHub Issues contain a variety of workstreams designed to challenge your skills in single-cell data analysis. Each issue includes a description, requirements, and expectations.  \n- **Workstream 1:** Unified scverse ecosystem plotting package – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/1)  \n- **Workstream 2:** Segger-SpatialData Integration – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/11)  \n- **Workstream 3:** Cross-sample comparisons with Squidpy – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/12)\n- **Workstream 4:** Knowledge-driven identification of therapeutic spatial clusters – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/14)\n- **Workstream 5:** Improve memory and runtime of spatialdata and spatialdata-io – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/10)\n- **Workstream 6:** {Micro,Tile}JSON for SpatialData – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/4)\n- **Workstream 7:** SpatialData: exploring ergonomics and speed improvements – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/6)\n- **Workstream 8:** SpatialData-IO support for annotations from histology tools – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/9)\n- **Workstream 9:** Exploring support for 2.5/3D shapes – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/8)\n- **Workstream 10:** Housekeeping \u0026 Cookiecutter template maintenance – [View detallied description](https://github.com/scverse/202503_hackathon_owkin/issues/7)\n\n\n*More workstreams might be added as task forces are confirmed.*\n\n---\n\n## Data \u0026 Tutorials\n\nTo help you get started quickly, we have prepared:\n\n- **Data Access Instructions:**  \n  Detailed guidelines on how to download and explore the datasets [scverse/202503_hackathon_owkin \u003e data](https://github.com/scverse/202503_hackathon_owkin/tree/main/data).\n\n- **Tutorials:**  \n  Generally, we recommend to check out the following tutorials pages, depending on your project:\n  - [AnnData](https://anndata.readthedocs.io/en/stable/tutorials/index.html)\n  - [MuData](https://mudata.readthedocs.io/en/latest/notebooks/quickstart_mudata.html)\n  - [SpatialData](https://spatialdata.scverse.org/en/stable/tutorials/notebooks/notebooks.html)\n  - [Scanpy](https://scanpy.readthedocs.io/en/stable/tutorials/index.html)\n  - [Squidpy](https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/index.html)\n\n---\n\n## Important Information\n\n- **Meals:**  \n  - Breakfast and lunch are provided by Owkin (with vegetarian and vegan options).  \n  - **Note:** Lunch will not be provided on Wednesday.\n\n- **Afterworks:**  \n  - **Monday:** Afterwork at Owkin  \n  - **Tuesday:** Afterwork at [Bianca](https://maps.app.goo.gl/paTs1PoTaLMpGFsJ9) (with drinks and light food)\n\n- **Emergency Contacts:**  \n  - **Reception:** (+33) 6 07 95 41 38  \n  - **Building Security:** (+33) 6 59 23 49 77\n\n---\n\n## Communication\n\nStay connected and be in the loop by [joining our Zulip](https://scverse.zulipchat.com) and look for the [2025-03 hackathon owkin](https://scverse.zulipchat.com/#narrow/channel/488601-2025-03-hackathon-owkin) channel.\n\nIf you have any questions or doubts, please reach out, either via Zulip or using the contact information below.\n\n---\n\n## Contact\n\nFor further inquiries or support, please contact us at:\n\n- **Email:** [core@scverse.org](mailto:core@scverse.org)\n\n---\n\nWe look forward to your innovative contributions and a dynamic hackathon experience at the Owkin office in Paris!\n\n*Organized by the scverse team in collaboration with Owkin.*\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscverse%2F202503_hackathon_owkin","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fscverse%2F202503_hackathon_owkin","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fscverse%2F202503_hackathon_owkin/lists"}