{"id":16276390,"url":"https://github.com/sdhutchins/labrat","last_synced_at":"2025-03-20T01:32:05.676Z","repository":{"id":89745665,"uuid":"99277244","full_name":"sdhutchins/labrat","owner":"sdhutchins","description":"A basic science lab framework aimed at reproducibility and lab management.","archived":false,"fork":false,"pushed_at":"2023-12-20T04:28:15.000Z","size":228,"stargazers_count":10,"open_issues_count":13,"forks_count":6,"subscribers_count":4,"default_branch":"master","last_synced_at":"2024-01-30T04:07:40.464Z","etag":null,"topics":["genetics","gui","lab","lab-inventory","lab-management","lab-report","lab-website","laboratory","laboratory-automation","labrat","molecular-biology","psychiatry","python","reproducible-research","science"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sdhutchins.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2017-08-03T21:40:40.000Z","updated_at":"2024-01-22T05:35:02.000Z","dependencies_parsed_at":null,"dependency_job_id":"3c072d1b-5138-4389-89ce-21ef1757a4d6","html_url":"https://github.com/sdhutchins/labrat","commit_stats":{"total_commits":84,"total_committers":10,"mean_commits":8.4,"dds":0.5714285714285714,"last_synced_commit":"bc75fdc2749ae1876610cc71a1e7e8d926aa30ab"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sdhutchins%2Flabrat","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sdhutchins%2Flabrat/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sdhutchins%2Flabrat/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sdhutchins%2Flabrat/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sdhutchins","download_url":"https://codeload.github.com/sdhutchins/labrat/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":219865984,"owners_count":16555922,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["genetics","gui","lab","lab-inventory","lab-management","lab-report","lab-website","laboratory","laboratory-automation","labrat","molecular-biology","psychiatry","python","reproducible-research","science"],"created_at":"2024-10-10T18:48:14.892Z","updated_at":"2025-03-20T01:32:05.669Z","avatar_url":"https://github.com/sdhutchins.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# labrat\n\n[![Build Status](https://app.travis-ci.com/sdhutchins/labrat.svg?token=xfnbNTQhjNbir5xACn8R\u0026branch=master)](https://app.travis-ci.com/sdhutchins/labrat)\n\nA basic science lab framework aimed at reproducibility and lab management. This package is in the very early stages of development.\n\n## Features\n\n- Easily use math functions to dilute solutions, calculate molarity, etc.\n- Backup your documents using the command-line\n- Manage lab inventory using a GUI\n- Create and manage new projects using the command-line\n\n## Install\n\n1. Clone this repository.\n2. Change to the downloaded repository's base directory.\n3. `pip install .`\n\nIf you want to develop or contribute to this package, install with `pip install -e .`\n\n## Examples\n\n### Dilute a stock concentration\n\n```python\nfrom labrat.math import dilute_stock\n\n# Get the final concentration\ndilute_stock(100, 2, **{'vF': 4})\n```\n\n### Project Management\n\nCreate a new project using the below code. This will create a `.labrat` file that contains the project information for\nany project created.\n\n```python\n# Create a new project\nimport os\nfrom labrat.project import ProjectManager\n\n# Initialize the ProjectManager with a username\nproject_manager = ProjectManager('Dr. Jane Doe')\n\n# Create a new project\nproject_manager.new_project(\n    project_type='computational-biology',\n    project_name='KARG Analysis',\n    project_path=os.getcwd(),\n    description=\"Analyze the KARG data.\"\n)\n```\n\nArchive a project:\n\n```python\nfrom projectmanager import ProjectManager\n\nproject_manager = ProjectManager()\nproject_path = \"/Users/shutchens/Documents/Git-Repos/labrat/karg_analysis\"\narchive_base_dir = \"/Users/shutchens/Archive\"\n\narchive_dir = project_manager.archive_project(project_path=project_path, archive_base_dir=archive_base_dir)\n```\n\nDelete a project:\n\n```python\n# Path to the project to delete\nproject_path = \"/Users/shutchens/Documents/Git-Repos/labrat/karg_analysis\"\narchive_base_dir = \"/Users/shutchens/Archive\"\n\n# Delete the project\narchived_path = project_manager.delete_project(project_path, archive_base_dir)\n```\n\n## ToDo\n\n- [ ] Add a lab inventory app\n- [ ] Add project report template\n- [ ] Command-line functionality\n- [ ] Integrate [exmemo](https://github.com/kalekundert/exmemo)\n\n## Author\n\nShaurita Hutchins · [@sdhutchins](https://github.com/sdhutchins)\n    · [:email:](mailto:shaurita.d.hutchins@gmail.com)\n\n## Contributing\n\nIf you would like to contribute to this package, install the package in\ndevelopment mode, and check out our [contributing\nguidelines](https://github.com/sdhutchins/labrat/blob/master/CONTRIBUTING.md).\n\n## License\n\n[MIT](https://github.com/sdhutchins/labrat/blob/master/LICENSE)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsdhutchins%2Flabrat","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsdhutchins%2Flabrat","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsdhutchins%2Flabrat/lists"}