{"id":18285387,"url":"https://github.com/seandavi/geoquery","last_synced_at":"2025-04-04T20:13:15.302Z","repository":{"id":9600559,"uuid":"11521881","full_name":"seandavi/GEOquery","owner":"seandavi","description":"The bridge between the NCBI Gene Expression Omnibus and Bioconductor","archived":false,"fork":false,"pushed_at":"2023-11-21T21:50:32.000Z","size":19995,"stargazers_count":82,"open_issues_count":18,"forks_count":34,"subscribers_count":6,"default_branch":"main","last_synced_at":"2024-05-15T17:31:48.940Z","etag":null,"topics":["bioconductor","bioinformatics","data-science","genomics","ncbi-geo","r","rstats"],"latest_commit_sha":null,"homepage":"http://seandavi.github.io/GEOquery","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/seandavi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2013-07-19T06:44:10.000Z","updated_at":"2024-04-23T05:19:55.000Z","dependencies_parsed_at":"2022-07-24T21:02:17.109Z","dependency_job_id":"31dde295-9e90-4731-991e-9d633dee63e4","html_url":"https://github.com/seandavi/GEOquery","commit_stats":{"total_commits":806,"total_committers":37,"mean_commits":"21.783783783783782","dds":0.718362282878412,"last_synced_commit":"58225fa5a21a016da26588a9d3d083e1d3ba2106"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seandavi%2FGEOquery/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/seandavi","download_url":"https://codeload.github.com/seandavi/GEOquery/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244739953,"owners_count":20501992,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","bioinformatics","data-science","genomics","ncbi-geo","r","rstats"],"created_at":"2024-11-05T13:16:31.357Z","updated_at":"2025-03-21T18:08:05.189Z","avatar_url":"https://github.com/seandavi.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Status\n\n\u003c!-- badges: start --\u003e\n[![R-CMD-check](https://github.com/seandavi/GEOquery/workflows/R-CMD-check/badge.svg)](https://github.com/seandavi/GEOquery/actions)\n[![Downloads](https://bioconductor.org/shields/downloads/release/GEOquery.svg)](https://bioconductor.org/packages/GEOquery)\n[![Years in Bioc](https://bioconductor.org/shields/years-in-bioc/GEOquery.svg)](https://bioconductor.org/packages/GEOquery)\n[![R-CMD-check](https://github.com/seandavi/GEOquery/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/seandavi/GEOquery/actions/workflows/R-CMD-check.yaml)\n\u003c!-- badges: end --\u003e\n\n## Installation\n\nTo install from Bioconductor, use the following code:\n\n```\n# if needed, install BiocManager\ninstall.packages(\"BiocManager\")\n\n# install GEOquery\nBiocManager::install(\"GEOquery\")\n```\n\nTo install directly from github:\n\n```\nBiocManager::install('seandavi/GEOquery')\n```\n\n## Usage\n\nSee the full vignette in [rmarkdown](https://github.com/seandavi/GEOquery/blob/master/vignettes/GEOquery.Rmd) or visit Bioconductor for details:\n\n- [Release version](http://www.bioconductor.org/packages/release/bioc/html/GEOquery.html)\n- [Devel version](http://www.bioconductor.org/packages/devel/bioc/html/GEOquery.html)\n\n## How to contribute\n\nContributions to GEOquery development can be submitted as a [pull request](https://github.com/seandavi/GEOquery/pulls) or a [feature request issue](https://github.com/seandavi/GEOquery/issues). We recommend following the [Bioconductor coding standards](https://contributions.bioconductor.org/r-code.html) where possible.  \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fseandavi%2Fgeoquery","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fseandavi%2Fgeoquery","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fseandavi%2Fgeoquery/lists"}