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![update](https://badges.pufler.dev/updated/sebastian-gregoricchio/snakeATAC)\r\n![visits](https://badges.pufler.dev/visits/sebastian-gregoricchio/snakeATAC)\r\n![downloads](https://img.shields.io/github/downloads/sebastian-gregoricchio/snakeATAC/total.svg)---\u003e\r\n\r\n\r\n\r\n# snakeATAC [\u003cimg src=\"https://raw.githubusercontent.com/sebastian-gregoricchio/snakeATAC/main/resources/snakeATAC_logo.svg\" align=\"right\" height = 250/\u003e](https://sebastian-gregoricchio.github.io/snakeATAC)\r\n\r\n\u003cbr\u003e\r\n\r\n## Introduction\r\n`snakeATAC` is a **snake**make pipeline for the analyses of **ATAC**-seq data, with some analyses specific to cancer samples.\r\n\r\n\r\n### Citation\r\nIf you use this pipeline, please cite:\r\n\r\n\u003cdiv class=\"warning\" style='padding:2.5%; background-color:#ffffee; color:#787878; margin-left:5%; margin-right:5%; border-radius:15px;'\u003e\r\n\u003cspan\u003e\r\n\u003cfont size=\"-0.5\"\u003e\r\n\r\n\u003cdiv style=\"margin-left:2%; margin-right:2%; text-align: justify\"\u003e\r\nNo publication associated yet. \"\u003ci\u003esnakeATAC\u003c/i\u003e: a Snakemake Pipeline for the analyses of ATAC-seq data in Cancer samples. \u003cbr\u003e\r\n\u003ci\u003eXYZ\u003c/i\u003e, Volume X, Issue X, 2023, XYZ \u003cbr\u003e\r\nDOI: \u003ca href=\"https://doi.org/XYZ\"\u003eXYZ\u003c/a\u003e\r\n\u003c/div\u003e\r\n\u003c/font\u003e\r\n\r\n\u003c/span\u003e\r\n\u003c/div\u003e\r\n\r\n\u003cbr/\u003e\u003cbr/\u003e\r\n\r\n## Documentation [\u003cimg src=\"https://raw.githubusercontent.com/sebastian-gregoricchio/sebastian-gregoricchio.github.io/main/generic_resources/documentation.svg\" align=\"right\" height = 150/\u003e](https://github.com/sebastian-gregoricchio/snakeATAC/wiki)\r\nDetails on the [installation](https://github.com/sebastian-gregoricchio/snakeATAC/wiki/02.-Installation-and-dependencies) and [usage](https://github.com/sebastian-gregoricchio/snakeATAC/wiki/) of `snakeATAC` can be found at the dedicated [Wiki](https://github.com/sebastian-gregoricchio/snakeATAC/wiki/).\r\n\r\n\u003cbr/\u003e\u003cbr/\u003e\r\n\r\n-----------------\r\n## Package history and releases\r\nA list of all releases and respective description of changes applied could be found [here](https://sebastian-gregoricchio.github.io/snakeATAC/NEWS).\r\n\r\n## Contact\r\nFor any suggestion, bug fixing, commentary please report it in the [issues](https://github.com/sebastian-gregoricchio/snakeATAC/issues)/[request](https://github.com/sebastian-gregoricchio/snakeATAC/pulls) tab of this repository.\r\n\r\n## License\r\nThis repository is under a [GNU General Public License (version 3)](https://sebastian-gregoricchio.github.io/snakeATAC/LICENSE.md/LICENSE).\r\n\r\n\u003cbr/\u003e\r\n\r\n#### Contributors\r\n[![contributors](https://contrib.rocks/image?repo=sebastian-gregoricchio/snakeATAC)](https://sebastian-gregoricchio.github.io/)\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsebastian-gregoricchio%2Fsnakeatac","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsebastian-gregoricchio%2Fsnakeatac","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsebastian-gregoricchio%2Fsnakeatac/lists"}