{"id":13703362,"url":"https://github.com/seqan/seqan3","last_synced_at":"2026-03-01T00:02:55.431Z","repository":{"id":37405627,"uuid":"55410078","full_name":"seqan/seqan3","owner":"seqan","description":"The modern C++ library for sequence analysis. 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In case it cannot be displayed, show the text \"build status\" instead.\n    The picture, or alternative text, should link to `[2]`.\n--\u003e\n\n[1]: https://img.shields.io/github/actions/workflow/status/seqan/seqan3/ci_linux.yml?branch=main\u0026style=flat\u0026logo=github\u0026label=SeqAn3%20CI \"Open GitHub actions page\"\n[2]: https://github.com/seqan/seqan3/actions?query=branch%3Amain\n[3]: https://codecov.io/gh/seqan/seqan3/branch/main/graph/badge.svg?token=BH1FQiBBle \"Open Codecov page\"\n[4]: https://codecov.io/gh/seqan/seqan3\n[5]: https://img.shields.io/badge/license-BSD-green.svg \"Open Copyright page\"\n[6]: https://docs.seqan.de/seqan3/main_user/about_copyright.html\n[7]: https://img.shields.io/github/release/seqan/seqan3.svg \"Get the latest release\"\n[8]: https://github.com/seqan/seqan3/releases/latest\n[9]: https://img.shields.io/badge/platform-linux%20%7C%20bsd%20%7C%20osx-informational.svg \"Read more about our API\"\n[10]: https://docs.seqan.de/seqan3/main_user/about_api.html\n[11]: https://img.shields.io/github/stars/seqan/seqan3.svg?style=social \"See who starred us\"\n[12]: https://github.com/seqan/seqan3/stargazers\n[13]: https://img.shields.io/twitter/follow/SeqAnLib.svg?label=follow\u0026style=social \"Follow us on Twitter\"\n[14]: https://twitter.com/seqanlib\n\nSeqAn3 is the new version of the popular SeqAn template library for the analysis of biological sequences.\nIt enables the rapid development of high-performance solutions by providing generic algorithms and data structures\nfor:\n\n  * sequence representation and transformation\n  * full-text indexing and efficient search\n  * sequence alignment\n  * input/output of common file formats\n\nBy leveraging *Modern C++* it provides unprecedented ease-of-use without sacrificing performance.\n\nPlease see the [online documentation](https://docs.seqan.de/seqan3/main_user/) for more details.\n\n## Quick facts\n\n  * C++ header-only library: easy to integrate with your app \u0026 easy to distribute\n  * liberal open source license: allows integration with any app or library, requires only attribution\n  * very high code quality standards: \u003e97% unit test coverage, performance regression tests, ...\n  * extensive API documentation \u0026 tutorials: more lines of documentation than lines of code\n  * aims to support any 64-bit architecture running Linux/POSIX; currently big-endian CPU architectures\n    like s390x are less supported\n\n## Dependencies\n\n|                   | requirement                                          | version  | comment                                     |\n|-------------------|------------------------------------------------------|----------|---------------------------------------------|\n|**compiler**       | [GCC](https://gcc.gnu.org)                           | ≥ 12     |                                             |\n|                   | [Clang](https://clang.llvm.org)                      | ≥ 17     | tested with `-stdlib=libc++`                |\n|                   | [IntelOneAPI]()                                      | ≥ 2024.0 |                                             |\n|**build system**   | [CMake](https://cmake.org)                           | ≥ 3.20   | optional, but recommended                   |\n|**optional libs**  | [cereal](https://github.com/USCiLab/cereal)          | ≥ 1.3.1  | required for serialisation and CTD support  |\n|                   | [zlib](https://github.com/madler/zlib)               | ≥ 1.2    | required for `*.gz` and `.bam` file support |\n|                   | [bzip2](https://www.sourceware.org/bzip2)            | ≥ 1.0    | required for `*.bz2` file support           |\n\n## Usage\n\nWe recommend that you use CMake to build your project:\n\n  * [Setup-Tutorial](https://docs.seqan.de/seqan3/main_user/setup.html)\n  * Using CMake guarantees that all optional dependencies are automatically detected and activated.\n","funding_links":[],"categories":["Package suites","Projects"],"sub_categories":["AI"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fseqan%2Fseqan3","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fseqan%2Fseqan3","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fseqan%2Fseqan3/lists"}