{"id":18448820,"url":"https://github.com/sequana/sequanix","last_synced_at":"2025-04-08T01:32:43.016Z","repository":{"id":115175202,"uuid":"387728715","full_name":"sequana/sequanix","owner":"sequana","description":"Sequanix is a graphical user interface (GUI) that can be used to run Snakemake workflows.","archived":false,"fork":false,"pushed_at":"2024-02-20T09:00:46.000Z","size":483,"stargazers_count":6,"open_issues_count":3,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2024-10-31T21:36:39.304Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sequana.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2021-07-20T08:44:24.000Z","updated_at":"2024-10-02T15:39:44.000Z","dependencies_parsed_at":null,"dependency_job_id":"4f4448b2-85d7-4c6b-8091-e6b3fcc511ef","html_url":"https://github.com/sequana/sequanix","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sequana%2Fsequanix","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sequana%2Fsequanix/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sequana%2Fsequanix/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sequana%2Fsequanix/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sequana","download_url":"https://codeload.github.com/sequana/sequanix/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":223297185,"owners_count":17122014,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T07:17:21.881Z","updated_at":"2024-11-06T07:17:22.485Z","avatar_url":"https://github.com/sequana.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"Sequanix\n########\nSequanix is a graphical user interface (GUI) that can be used to run Snakemake workflows.\n\n\n.. image:: https://badge.fury.io/py/sequanix.svg\n    :target: https://pypi.python.org/pypi/sequanix\n\n.. image:: https://github.com/sequana/sequanix/actions/workflows/main.yml/badge.svg?branch=main\n    :target: https://github.com/sequana/sequanix/actions/workflows/main.yml\n\n.. image:: https://coveralls.io/repos/github/sequana/sequanix/badge.svg?branch=main\n    :target: https://coveralls.io/github/sequana/sequanix?branch=main\n\n.. image:: http://readthedocs.org/projects/sequana/badge/?version=main\n    :target: https://sequana.readthedocs.io/en/main/sequanix.html\n    :alt: Documentation Status\n\n\n:Python version: 3.8, 3.9, 3.10\n:Documentation: `On readthedocs \u003chttp://sequana.readthedocs.org/\u003e`_\n:Issues: `On github \u003chttps://github.com/sequana/sequana/issues\u003e`_\n:How to cite: Citations are important for us to carry on developments.\n\n    For **Sequanix**: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen,\n    Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer.\n    Sequanix: A Dynamic Graphical Interface for Snakemake Workflows\n    Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034\n    Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)\n\n**Sequanix** is a derivative of the **Sequana** project that is dedicated to the analyse of NGS data (sequencing data). We provide a set of NGS pipelines  including quality control, variant calling, coverage, taxonomy, transcriptomics. Please see the Sequana `documentation \u003chttp://sequana.readthedocs.org\u003e`_ for an up-to-date status and further information.\n\n\n\nNotes\n######\n\nFix OpenGL for mac Big Sur: https://stackoverflow.com/a/64021312/11988671\n\n\nInstallation\n############\n\nPlease see the installation notes and installation steps on the https://sequana.readthedocs.io link.\n\n\nIn brief::\n\n    pip install sequanix\n\nFor developers, use::\n\n\n    git clone git@github.com:sequana/sequanix.git\n    pip install -e .[testing]\n\nMore documentation\n###################\n\nFor now, you may find more documentation on https://sequana.readthedocs.io\n\n\nDesign choice\n#############\n\nUses PySide6 from v0.2.0. See e.g., https://www.pythonguis.com/faq/pyqt6-vs-pyside6/ from information\non the switch to PySide6. In brief, the Qt project has recently adopted PySide as the official Qt for Python release which should ensure its viability going forward. When we migrate PyQt5 to PyQt6, we therefore decided to use PySide instead of PyQt.\n\nChangelog\n~~~~~~~~~\n\n========= ==========================================================================\nVersion   Description\n========= ==========================================================================\n0.3.0     * refactoring to use click and new sequana_pipetools\n0.2.0     * add logo\n          * remove pin on python3.7\n          * switch from PyQt5 to PySide6\n          * remove automatic creation of readtag in config. we let the pipelines\n            handle it\n0.1.0     * revamp Sequanix independently of Sequana\n========= ==========================================================================\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsequana%2Fsequanix","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsequana%2Fsequanix","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsequana%2Fsequanix/lists"}