{"id":16273799,"url":"https://github.com/sgibb/maldiquant","last_synced_at":"2025-04-12T02:25:45.748Z","repository":{"id":4958257,"uuid":"6115689","full_name":"sgibb/MALDIquant","owner":"sgibb","description":"Quantitative Analysis of Mass Spectrometry Data","archived":false,"fork":false,"pushed_at":"2024-08-20T18:10:39.000Z","size":1806,"stargazers_count":62,"open_issues_count":5,"forks_count":25,"subscribers_count":9,"default_branch":"master","last_synced_at":"2025-04-12T02:25:37.238Z","etag":null,"topics":["cran","maldi","maldi-ims","maldi-tof-ms","mass-spectrometry","r","r-package"],"latest_commit_sha":null,"homepage":"https://strimmerlab.github.io/software/maldiquant/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sgibb.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":"codemeta.json","zenodo":null}},"created_at":"2012-10-07T19:48:42.000Z","updated_at":"2025-02-28T18:08:56.000Z","dependencies_parsed_at":"2024-01-22T22:29:03.164Z","dependency_job_id":"956174c4-2536-429c-af43-671a0fb596b7","html_url":"https://github.com/sgibb/MALDIquant","commit_stats":{"total_commits":624,"total_committers":7,"mean_commits":89.14285714285714,"dds":0.03205128205128205,"last_synced_commit":"82a3cf32568f0d95ef7472bf0a446194cba25526"},"previous_names":[],"tags_count":30,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgibb%2FMALDIquant","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgibb%2FMALDIquant/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgibb%2FMALDIquant/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgibb%2FMALDIquant/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sgibb","download_url":"https://codeload.github.com/sgibb/MALDIquant/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248506420,"owners_count":21115425,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cran","maldi","maldi-ims","maldi-tof-ms","mass-spectrometry","r","r-package"],"created_at":"2024-10-10T18:25:47.074Z","updated_at":"2025-04-12T02:25:45.724Z","avatar_url":"https://github.com/sgibb.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# MALDIquant\n\n\u003c!-- badges: start --\u003e\n[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n[![R-CMD-check](https://github.com/sgibb/MALDIquant/workflows/R-CMD-check/badge.svg)](https://github.com/sgibb/MALDIquant/actions)\n[![codecov.io](https://codecov.io/github/sgibb/MALDIquant/coverage.svg?branch=master)](https://codecov.io/github/sgibb/MALDIquant?branch=master)\n[![license](https://img.shields.io/badge/license-GPL%20%28%3E=%203%29-brightgreen.svg?style=flat)](https://www.gnu.org/licenses/gpl-3.0.html)\n[![cran checks](https://badges.cranchecks.info/worst/MALDIquant.svg)](https://cran.r-project.org/web/checks/check_results_MALDIquant.html)\n[![metacran version](https://www.r-pkg.org/badges/version/MALDIquant)](https://cran.r-project.org/web/packages/MALDIquant/index.html)\n[![metacran downloads](https://cranlogs.r-pkg.org/badges/MALDIquant?color=brightgreen)](https://cran.r-project.org/web/packages/MALDIquant/index.html)\n  \u003c!-- badges: end --\u003e\n\nQuantitative Analysis of Mass Spectrometry Data\n\n\n## Description\n\nMALDIquant provides a complete analysis pipeline for\nmatrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)\nand other two-dimensional mass spectrometry data.\n\nIn addition to commonly used plotting and processing methods it\nincludes distinctive features, namely baseline\nsubtraction methods such as morphological filters (TopHat) or the\nstatistics-sensitive non-linear iterative peak-clipping algorithm\n(SNIP), peak alignment using warping functions, handling of replicated\nmeasurements as well as allowing spectra with different resolutions.\n\nPlease visit: https://strimmerlab.github.io/software/maldiquant/\n\n\n## Contact\n\nYou are welcome to:\n\n* submit suggestions and bug-reports at: \u003chttps://github.com/sgibb/MALDIquant/issues\u003e\n* send a pull request on: \u003chttps://github.com/sgibb/MALDIquant/\u003e\n* compose an e-mail to: \u003cmail@sebastiangibb.de\u003e\n\n\n## Install\n\nYou can install the latest release directly from\n[CRAN](https://cran.r-project.org/web/packages/MALDIquant/index.html).\n\n```r\ninstall.packages(\"MALDIquant\")\n```\n\n## Install development version (not recommended)\n\n[GitHub](https://github.com) is not directly supported by the basic\n`install.packages` command. You could use the\n[devtools](https://cran.r-project.org/web/packages/devtools/index.html) package\nto install the development version of MALDIquant\n(you will need a complete development environment to compile the some c code).\n\n```r\ninstall.packages(\"devtools\")\nlibrary(\"devtools\")\ninstall_github(\"sgibb/MALDIquant\")\n```\n\n## Examples\nTo illustrate the application of MALDIquant for analyses of mass spectrometry\ndata please find a number of example R scripts in the\n[MALDIquantExamples](https://github.com/sgibb/MALDIquantExamples) repository.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsgibb%2Fmaldiquant","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsgibb%2Fmaldiquant","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsgibb%2Fmaldiquant/lists"}