{"id":48413472,"url":"https://github.com/sgkit-dev/sgkit-publication","last_synced_at":"2026-04-06T06:34:34.951Z","repository":{"id":62839556,"uuid":"319981144","full_name":"sgkit-dev/sgkit-publication","owner":"sgkit-dev","description":"Sgkit publication repository","archived":false,"fork":false,"pushed_at":"2024-03-06T09:24:41.000Z","size":364,"stargazers_count":5,"open_issues_count":19,"forks_count":5,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-10-18T02:07:45.246Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sgkit-dev.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2020-12-09T14:26:25.000Z","updated_at":"2024-03-05T16:02:18.000Z","dependencies_parsed_at":"2023-12-21T11:43:17.427Z","dependency_job_id":"3f52e329-2ff1-405b-9127-2ec1c454d8ea","html_url":"https://github.com/sgkit-dev/sgkit-publication","commit_stats":{"total_commits":118,"total_committers":3,"mean_commits":"39.333333333333336","dds":"0.025423728813559365","last_synced_commit":"35f0a5bdedb8f7e82664c3ed0fba92531f38132a"},"previous_names":["sgkit-dev/sgkit-publication","pystatgen/sgkit-publication"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/sgkit-dev/sgkit-publication","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgkit-dev%2Fsgkit-publication","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgkit-dev%2Fsgkit-publication/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgkit-dev%2Fsgkit-publication/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgkit-dev%2Fsgkit-publication/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sgkit-dev","download_url":"https://codeload.github.com/sgkit-dev/sgkit-publication/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sgkit-dev%2Fsgkit-publication/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31463014,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-05T21:22:52.476Z","status":"online","status_checked_at":"2026-04-06T02:00:07.287Z","response_time":112,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-04-06T06:34:34.870Z","updated_at":"2026-04-06T06:34:34.943Z","avatar_url":"https://github.com/sgkit-dev.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"# sgkit-publication\n\nThis repo contains the manuscript for the publication describing sgkit,\nalong with all code required to generate figures and example analyses.\n\n## Contribution\n\nWriting occurs either via this repo and the standard GitHub workflows,\nor using the linked\n[Overleaf project](https://www.overleaf.com/project/659c19afc265913df38df1ab).\nBoth are useful for different things, and so will be used in parallel.\n\nPlease contact Jerome Kelleher if you want to get edit access on\nOverleaf.\n\n## Contributing via Overleaf\n\nGitHub syncing on Overleaf can be somewhat fragile, and the process needs\nto be manually curated (Jerome Kelleher will manage).\nFrom previous experience, the following protocols work reasonably well:\n\n- **DO NOT USE** Overleaf's \"Visual Editor\". This can change the source LaTeX\n  in arbitrary ways, and really muck things up for those of us using\n  line-oriented editors. Please stick to the default \"Code Editor\" view.\n- Only edit the files ``paper.tex`` and ``paper.bib`` on Overleaf. For anything\n  else, please use GitHub.\n\n\n## General contributing guidelines\n\n- Please insert line-breaks before 90-100 characters, ideally at semantic\n  break points. (Less necessary on Overleaf, but it makes keeping track of changes\n  on git easier, and also helps people using old-school editors).\n\n- When adding to the bibliography, please use Google Scholar's key format\n  (e.g. `garud2015recent`), or preferably use Google Scholar's bibtex export\n  (click the \"cite\" link for a particular paper, and the Bibtex option is on the\n  bottom).\n\n\n## Use of Issues/Discussions/Overleaf comments\n\nAll of these routes are useful for different things. Here are some rough\nguidelines on when they might be used:\n\n- GitHub Discussions should be used for high-level topics, where there isn't\n  any particular action to be taken and the threaded nature can be useful\n  (e.g., https://github.com/sgkit-dev/sgkit-publication/discussions/51)\n- GitHub issues should be designed to be closed by some action---issues\n  keep track of specific problems that need to be resolved. Ultimately\n  we should have 0 issues open when the paper is submitted/published.\n- Overleaf comments are useful for short comments on the text. These should\n  also be designed to be closed, as the value of text comments drops quickly\n  when there are lots lying around unresolved.\n  Any longer discussions arising from the text should move to GitHub.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsgkit-dev%2Fsgkit-publication","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsgkit-dev%2Fsgkit-publication","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsgkit-dev%2Fsgkit-publication/lists"}