{"id":24099730,"url":"https://github.com/shencangsheng/trimmomatic-pigz","last_synced_at":"2025-05-07T21:34:17.867Z","repository":{"id":137187699,"uuid":"292453708","full_name":"shencangsheng/Trimmomatic-pigz","owner":"shencangsheng","description":"A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.","archived":false,"fork":false,"pushed_at":"2024-11-20T04:04:46.000Z","size":134,"stargazers_count":16,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-31T14:13:48.796Z","etag":null,"topics":["faster","parallel","speedup","trimmomatic"],"latest_commit_sha":null,"homepage":"","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/shencangsheng.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-09-03T03:14:11.000Z","updated_at":"2025-03-05T23:36:55.000Z","dependencies_parsed_at":null,"dependency_job_id":"d0b38c89-b987-4c71-9de8-29ca73653049","html_url":"https://github.com/shencangsheng/Trimmomatic-pigz","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shencangsheng%2FTrimmomatic-pigz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shencangsheng%2FTrimmomatic-pigz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shencangsheng%2FTrimmomatic-pigz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shencangsheng%2FTrimmomatic-pigz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/shencangsheng","download_url":"https://codeload.github.com/shencangsheng/Trimmomatic-pigz/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":252957500,"owners_count":21831499,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["faster","parallel","speedup","trimmomatic"],"created_at":"2025-01-10T15:37:51.849Z","updated_at":"2025-05-07T21:34:17.844Z","avatar_url":"https://github.com/shencangsheng.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Trimmomatic-pigz\n\nA 10x faster version base on [official trimmomatic](http://www.usadellab.org/cms/?page=trimmomatic). The results of trimmomatic-pigz are exactly the same with official trimmomatic.(md5sum with decompression fastq)\n\nDownload: https://github.com/jaydenSen/Trimmomatic-pigz/releases/download/v1.0/trimmomatic-pigz.jar\n\n## Principle\n\nWe replaced gzip library with a parallelized version: pigz.\n\nhttps://github.com/shevek/parallelgzip\n\n\u003e This library contains a parallelized GZIP implementation which is a high performance drop-in replacement for the standard java.util.zip classes. It is a pure Java equivalent of the pigz parallel compresssor.\n\n## Benchmark test\n\nTest in paired end Mode with two fastq.gz(R1/R2):\n\n![image](https://github.com/jaydenSen/Trimmomatic-pigz/raw/master/benchmark-test.png)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fshencangsheng%2Ftrimmomatic-pigz","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fshencangsheng%2Ftrimmomatic-pigz","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fshencangsheng%2Ftrimmomatic-pigz/lists"}