{"id":21861096,"url":"https://github.com/sib-swiss/first-steps-with-r-training","last_synced_at":"2025-04-14T19:22:10.952Z","repository":{"id":61113609,"uuid":"451496622","full_name":"sib-swiss/first-steps-with-R-training","owner":"sib-swiss","description":"repository of the 2-day course \"First steps with R in Life Sciences\" from SIB-training","archived":false,"fork":false,"pushed_at":"2025-02-05T07:20:17.000Z","size":130644,"stargazers_count":46,"open_issues_count":2,"forks_count":12,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-03-28T07:41:38.700Z","etag":null,"topics":["programming","r","training","training-materials"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc-by-4.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sib-swiss.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-01-24T14:27:10.000Z","updated_at":"2025-03-27T14:13:18.000Z","dependencies_parsed_at":"2023-02-17T21:15:46.631Z","dependency_job_id":"1d2cbf0e-98a0-4d30-8ef4-1375bc72cebb","html_url":"https://github.com/sib-swiss/first-steps-with-R-training","commit_stats":null,"previous_names":[],"tags_count":8,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Ffirst-steps-with-R-training","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Ffirst-steps-with-R-training/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Ffirst-steps-with-R-training/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Ffirst-steps-with-R-training/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sib-swiss","download_url":"https://codeload.github.com/sib-swiss/first-steps-with-R-training/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248943415,"owners_count":21186958,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["programming","r","training","training-materials"],"created_at":"2024-11-28T03:09:53.802Z","updated_at":"2025-04-14T19:22:10.935Z","avatar_url":"https://github.com/sib-swiss.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14808144.svg)](https://doi.org/10.5281/zenodo.14808144)\n\n\n\n# First steps with R in Life Sciences\n\nThis course material is part of the \"First Steps with R in Life Science\" two-day course of [SIB Training](https://www.sib.swiss/training/upcoming-training-courses) and is \n addressed to beginners wanting to become familiar with the R syntax, environment, and the most common commands to start using R to explore and interpret their data.\n\nThis course material provides an introduction to [R](https://www.r-project.org/) and [Rstudio](https://www.rstudio.com/) (an integrated development environment for R) in an interactive manner. \nIt contains example data-sets to practise data manipulation, graphical exploration and statistical hypothesis testing.\n\n## prerequisite installation\n\nTo follow this course, make sure you have [R](https://www.r-project.org/) and [Rstudio](https://www.rstudio.com/) installed beforehand.\n\n## course material organization\n\nThe course material is organized in parts corresponding to the 2 days of the course.\n\nThe slides provided contain both theory and hands-on practice session instructions. \n\nThe data used in the practicals can be found in the data [`course_datasets/`](course_datasets/) folder, and\nsolutions codes can be found in the [`solutions/`](solutions/) folder (NB: practise session 1 and 2 do not have associated code).\n\n * [Day 1 slides](slides/First-steps-with-R_day1.pdf) covers the most basic aspects\n \t* first contact with the language and software\n \t* most common data types in R\n \t* reading and writing data files with R\n * [Day 2 - morning slides](slides/First-steps-with-R_day2_morning.pdf) discusses visualization in R and how to create and customize simple, yet efficient, graphics from your data\n * [Day 2 - afternoon slides](slides/First-steps-with-R_day2_afternoon.pdf) introduces how to perform statistical analysis in R (be warned: this is not a statistics course and only aims to show how the language deals with it)\n\n## Citation\n\nIf you enjoyed this course or found it beneficial and want to refer to it, please cite it as :\n\nDuchemin, W. \u0026 Burdet, F. (2025, February 5). First steps with R in Life Sciences - SIB course material. Zenodo. [https://doi.org/10.5281/zenodo.14808144](https://doi.org/10.5281/zenodo.14808144)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsib-swiss%2Ffirst-steps-with-r-training","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsib-swiss%2Ffirst-steps-with-r-training","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsib-swiss%2Ffirst-steps-with-r-training/lists"}