{"id":21861065,"url":"https://github.com/sib-swiss/single-cell-training","last_synced_at":"2025-04-05T15:06:50.627Z","repository":{"id":37757878,"uuid":"370586695","full_name":"sib-swiss/single-cell-training","owner":"sib-swiss","description":"SIB course on single cell transcriptomics by mostly using the Seurat pipeline","archived":false,"fork":false,"pushed_at":"2024-10-29T12:46:28.000Z","size":238956,"stargazers_count":77,"open_issues_count":2,"forks_count":37,"subscribers_count":6,"default_branch":"master","last_synced_at":"2024-10-29T15:12:35.865Z","etag":null,"topics":["bioinformatics","course","rna-seq","single-cell","teaching","tutorial"],"latest_commit_sha":null,"homepage":"https://sib-swiss.github.io/single-cell-training/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc-by-4.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sib-swiss.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-05-25T06:22:37.000Z","updated_at":"2024-10-29T12:43:29.000Z","dependencies_parsed_at":"2024-11-28T03:09:53.215Z","dependency_job_id":"c16e2d01-4c46-41c5-8ee6-e276e0c71b95","html_url":"https://github.com/sib-swiss/single-cell-training","commit_stats":null,"previous_names":[],"tags_count":19,"template":false,"template_full_name":"sib-swiss/course_website_template","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Fsingle-cell-training","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Fsingle-cell-training/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Fsingle-cell-training/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sib-swiss%2Fsingle-cell-training/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sib-swiss","download_url":"https://codeload.github.com/sib-swiss/single-cell-training/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247353745,"owners_count":20925329,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","course","rna-seq","single-cell","teaching","tutorial"],"created_at":"2024-11-28T03:09:47.143Z","updated_at":"2025-04-05T15:06:50.608Z","avatar_url":"https://github.com/sib-swiss.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"![build workflow](https://github.com/sib-swiss/single-cell-training/actions/workflows/docker-image.yml/badge.svg)\n![GitHub Release Date](https://img.shields.io/github/release-date/sib-swiss/single-cell-training)\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5703106.svg)](https://doi.org/10.5281/zenodo.5703106)\n[![License: CC BY-SA 4.0](https://img.shields.io/badge/License-CC_BY--SA_4.0-lightgrey.svg)](https://creativecommons.org/licenses/by-sa/4.0/)\n\nThis website is hosted at: https://sib-swiss.github.io/single-cell-training/\n\nPlease refer to [issues](https://github.com/sib-swiss/single-cell-training/issues) for improvements/bugs for course material or the website. \n\nAny contribution to this course material is highly appreciated :+1:. Please have a look at the [CONTRIBUTING.md](CONTRIBUTING.md) file to learn more on how to contribute. \n\n# Course website single cell transcriptomics\n\n## Authors\n\n- Tania Wyss [ORCiD](https://orcid.org/0000-0003-2641-0895)\n- Rachel Marcone-Jeitziner [ORCiD](https://orcid.org/0000-0002-5711-8435)\n- Geert van Geest [ORCiD](https://orcid.org/0000-0002-1561-078X)\n- Patricia Palagi [ORCiD](https://orcid.org/0000-0001-9062-6303)\n\n## How reuse this material\n\nThis website is generated with [quarto](https://quarto.org/). To re-build the website, download and install [Rstudio](https://posit.co/download/rstudio-desktop/) and [Quarto CLI](https://quarto.org/docs/get-started/). Also make sure you have installed the [required packages](Docker/install_packages.R). After that, clone this repository:\n\n```sh\ngit clone https://github.com/sib-swiss/single-cell-training.git\n```\n\nOpen the project in Rstudio, and run in the terminal:\n\n```R\nquarto preview\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsib-swiss%2Fsingle-cell-training","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsib-swiss%2Fsingle-cell-training","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsib-swiss%2Fsingle-cell-training/lists"}