{"id":13460118,"url":"https://github.com/silky/awesome-open-science","last_synced_at":"2025-03-24T18:33:06.920Z","repository":{"id":20792548,"uuid":"24077732","full_name":"silky/awesome-open-science","owner":"silky","description":"some links to projects/tools related to \"open science\".","archived":false,"fork":false,"pushed_at":"2017-10-31T20:45:51.000Z","size":20,"stargazers_count":149,"open_issues_count":0,"forks_count":15,"subscribers_count":16,"default_branch":"master","last_synced_at":"2024-05-23T04:12:05.043Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Haskell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/silky.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-09-15T23:27:17.000Z","updated_at":"2024-05-06T15:51:35.000Z","dependencies_parsed_at":"2022-08-28T17:52:04.515Z","dependency_job_id":null,"html_url":"https://github.com/silky/awesome-open-science","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silky%2Fawesome-open-science","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silky%2Fawesome-open-science/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silky%2Fawesome-open-science/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silky%2Fawesome-open-science/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/silky","download_url":"https://codeload.github.com/silky/awesome-open-science/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245328490,"owners_count":20597434,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-07-31T10:00:35.852Z","updated_at":"2025-03-24T18:33:06.884Z","avatar_url":"https://github.com/silky.png","language":"Haskell","funding_links":[],"categories":["Uncategorized","Technical","Haskell","Relevant Awesome Lists","To Sort","Similar Awesome Lists"],"sub_categories":["Uncategorized","awesome-*","Tutorials"],"readme":"awesome-open-science\n====================\n\nsome links to projects/tools related to \"open science\". add to this by\nforking and pull-requesting.\n\nin a similar vein to\n[awesome-awesomeness](https://github.com/bayandin/awesome-awesomeness).\n\ncomputation environments\n------------------------\n\n-   [IPython Notebook](http://ipython.org/notebook.html) (evolving into\n    [Jupyter](https://jupyter.org/)): A browser-based notebook with\n    support for code, rich text, mathematical expressions, inline plots\n    and other rich media.\n-   [Maxima](http://maxima.sourceforge.net): A computer algebra system\n    developed in Lisp for (symbolic) mathematical computations.\n-   [Sage Math Cloud](http://cloud.sagemath.com/): Provides Sage,\n    Python, and other environments for computing on the cloud; also\n    provides terminal access and git commands for cloning repositories.\n\npeer-review\n-----------\n\n-   [Hypothes.is](https://hypothes.is/): Steps towards annotating and\n    peer-reviewing the Web.\n\ndocument writing\n----------------\n\n-   [Authorea](http://authorea.com/): Backed by Pandoc and Git for\n    collaborative document writing.\n-   [ShareLaTeX](https://www.sharelatex.com/): Online collaborative\n    LaTeX editor\n-   [WriteLaTeX](https://www.writelatex.com/): Online collaborative\n    LaTeX editor\n\ndiscovery\n---------\n\n-   [Paperscape](http://paperscape.org/)\n\ndata management\n---------------\n\n-   [Academic Torrents](http://academictorrents.com/): Publish large\n    datasets as torrents.\n-   [Dat-Data](http://dat-data.com/): Dat is an open source project that\n    provides a streaming interface between every file format and data\n    storage backend.\n\nreproducibility\n---------------\n\n-   [Code as a Research\n    Object](https://www.mozillascience.org/projects/codemeta): Assign a\n    DOI to your code and make it citable.\n-   [Figshare](http://figshare.com/): Platform for making research\n    artefacts uploadable and citable.\n-   [Reproduced papers](http://reproduced-papers.github.io/): Collection\n    of links to various researchers reproducing particular papers.\n-   [Zenodo](https://zenodo.org/): Platform to host versions of code\n    that can be cited; can be linked to GitHub.\n-   [steps towards reproducible research](http://kbroman.org/steps2rr/):\n    A tutorial/best practices for making your research reproducible.\n\nproject management\n------------------\n\n-   [GitHub](https://github.com): (Naturally.)\n-   [Open science framework](http://osf.io/): Collect together various\n    sources (GitHub, DropBox, etc) into one spot.\n-   [Trello](https://trello.com/) and\n    [Libreboard](http://libreboard.com/) (open source self-hosted\n    alternative): Keep track of to-do items in various lists of lists;\n    keep track of figures, comments, questions, issues, etc.\n\norganisations\n-------------\n\n-   [Center for Open Science](http://cos.io/)\n-   [Mozilla Science Lab](https://www.mozillascience.org/)\n-   [rOpenScience](http://ropensci.org/)\n\njournals/preprint servers\n-------------------------\n\n-   [ArXiv](http://arxiv.org): e-Print archive\n-   [ECCC](http://eccc.hpi-web.de/): The Electronic Colloquium on\n    Computational Complexity - new papers in TCS.\n-   [SciRate](https://scirate.com/): Front for the\n    [arXiv](http://arxiv.org/), with voting and comments and accounts.\n\ntraining/meetups\n----------------\n\n-   [software carpentry](http://software-carpentry.org/)\n\ncommunity wikis\n---------------\n\n-   [Complexity Zoo](https://complexityzoo.uwaterloo.ca/Complexity_Zoo):\n    Definitions of complexity classes in theoreticaly computer science.\n-   [Mozilla Science Lab Forum](https://forum.mozillascience.org/)\n-   [nLab](http://ncatlab.org/nlab/): A wiki-lab for collaborative work\n    on Mathematics, Physics and Philosophy — especially from the n-point\n    of view: insofar as these subjects are usefully treated with tools\n    and notions of category theory or higher category theory.\n\nbooks\n-----\n\n-   [Opening Science. The Evolving Guide on How the Web is Changing\n    Research, Collaboration and Scholarly\n    Publishing](http://book.openingscience.org/): A CC-BY-NC book on the\n    backgrounds of, tools, tutorials and best practices for open science\n\n-   [Probabilistic Programming and Bayesian Methods for\n    Hackers](http://camdavidsonpilon.github.io/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers/):\n    an intro to Bayesian methods and probabilistic programming from a\n    computation/understanding-first, mathematics-second point of view.\n    Uses python with pyMC for visualizing what's going on.\n\noperating systems\n-----------------\n\n-   [Debian Science](https://wiki.debian.org/DebianScience): Debian\n\n    operating system has many science related packages for different\n    scientific blends and tastes.\n\n-   [Fedora Astronomy\n    Spin](https://labs.fedoraproject.org/en/astronomy/): Fedora\n\n    Fedora Astronomy brings a complete open source toolchain to both\n    amateur\\\n    and professional astronomers.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsilky%2Fawesome-open-science","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsilky%2Fawesome-open-science","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsilky%2Fawesome-open-science/lists"}