{"id":24360485,"url":"https://github.com/simonsfoundation/tr1_batfko","last_synced_at":"2026-04-20T08:31:35.031Z","repository":{"id":98237975,"uuid":"77224811","full_name":"simonsfoundation/Tr1_batfKO","owner":"simonsfoundation","description":"Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation","archived":false,"fork":false,"pushed_at":"2016-12-23T19:25:32.000Z","size":340,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-12-25T19:54:38.277Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/simonsfoundation.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-12-23T12:42:55.000Z","updated_at":"2016-12-23T13:04:24.000Z","dependencies_parsed_at":"2023-05-18T21:30:39.802Z","dependency_job_id":null,"html_url":"https://github.com/simonsfoundation/Tr1_batfKO","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/simonsfoundation/Tr1_batfKO","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/simonsfoundation%2FTr1_batfKO","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/simonsfoundation%2FTr1_batfKO/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/simonsfoundation%2FTr1_batfKO/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/simonsfoundation%2FTr1_batfKO/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/simonsfoundation","download_url":"https://codeload.github.com/simonsfoundation/Tr1_batfKO/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/simonsfoundation%2FTr1_batfKO/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32039933,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-20T00:18:06.643Z","status":"online","status_checked_at":"2026-04-20T02:00:06.527Z","response_time":94,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-18T21:30:01.578Z","updated_at":"2026-04-20T08:31:34.969Z","avatar_url":"https://github.com/simonsfoundation.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Tr1_BatfKO_Irf1KO_Networks\n\nCritical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation\nIRF1 KO and BATF KO networks from Figures 7F-I, Supplemental Figures 7-8, Karwacz et al. 2017. Nature Immunology.\n\nThis repository is intended to be used with the Binder service.\nPlease click the image below: if all is well the link should redirect\nto a new binder image running a Jupyter notebook server.\n\nOnce the binder is launched, click on \"Irf1KO_BatfKO_Tr1_networks.ipynb\".  The iPython \nnotebook will open in a new tab.  Then, to visualize networks:\n1. Select \"Cell\" and then click \"Run All\"\n2. Draft Documentation for this tool can be found here:\n   https://github.com/simonsfoundation/jp_gene_viz/blob/master/doc/dNetwork%20widget%20overview.ipynb\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsimonsfoundation%2Ftr1_batfko","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsimonsfoundation%2Ftr1_batfko","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsimonsfoundation%2Ftr1_batfko/lists"}