{"id":29224570,"url":"https://github.com/sing-group/s2p","last_synced_at":"2026-02-04T05:04:17.593Z","repository":{"id":88302831,"uuid":"74998812","full_name":"sing-group/S2P","owner":"sing-group","description":"S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.","archived":false,"fork":false,"pushed_at":"2018-08-02T07:14:23.000Z","size":5381,"stargazers_count":3,"open_issues_count":0,"forks_count":0,"subscribers_count":4,"default_branch":"master","last_synced_at":"2026-01-15T05:04:15.156Z","etag":null,"topics":["maldi-tof-mass-spectrometry","maldi-tof-ms","mass-spectrometry","proteins"],"latest_commit_sha":null,"homepage":"http://www.sing-group.org/s2p/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sing-group.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2016-11-28T17:49:58.000Z","updated_at":"2025-08-05T04:56:03.000Z","dependencies_parsed_at":null,"dependency_job_id":"c5fd5f17-167e-424f-810f-3149f83a5397","html_url":"https://github.com/sing-group/S2P","commit_stats":null,"previous_names":[],"tags_count":22,"template":false,"template_full_name":null,"purl":"pkg:github/sing-group/S2P","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sing-group%2FS2P","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sing-group%2FS2P/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sing-group%2FS2P/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sing-group%2FS2P/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sing-group","download_url":"https://codeload.github.com/sing-group/S2P/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sing-group%2FS2P/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29070217,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-04T03:31:03.593Z","status":"ssl_error","status_checked_at":"2026-02-04T03:29:50.742Z","response_time":62,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["maldi-tof-mass-spectrometry","maldi-tof-ms","mass-spectrometry","proteins"],"created_at":"2025-07-03T06:07:23.416Z","updated_at":"2026-02-04T05:04:17.575Z","avatar_url":"https://github.com/sing-group.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"![Logo](s2p.png) S2P [![doi](https://img.shields.io/badge/DOI-10.1016%2Fj.cmpb.2017.11.024-blue.svg)](https://doi.org/10.1016/j.cmpb.2017.11.024) [![license](https://img.shields.io/badge/LICENSE-GPLv3-blue.svg)]() [![Build Status](https://travis-ci.org/sing-group/S2P.svg?branch=master)](https://travis-ci.org/sing-group/S2P)\n=================================\nS2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data. Please, visit the [official web page](http://www.sing-group.org/s2p) of the project for downloads and support.\n\nModules\n-------\nThis maven project is comprised of the following modules:\n* core: contains the default implementation API.\n* gui: contains several GUI components.\n* aibench: contains a GUI application based on AIBench framework ([AIBench](http://www.aibench.org/)).\n\nBuilding S2P\n------------\nThe final application can be built using the `mvn install` command. This command builds the three modules and generates the AIBench based application at `s2p-aibench/targets`.\n\nIn order to create the Windows/Linux portable versions and the Windows executable installers, two profiles can be specified: `createDistributables` and `createInstallers`, respectively. Both portable versions and installers are self-contained since they contain an embedded Java Runtime Environment to run the application.\n\n### Building the portable versions\nWindows/Linux portable versions can be built using the `mvn install -PcreateDistributables` command. This command generates the following four portable versions of S2P at `s2p-aibench/target/builds`: Linux 32-bit, Linux 64-bit, Windows 32-bit and Windows 64-bit.\n\n### Building the Windows installers\nNSIS-based Windows installers can be built using the `mvn install -PcreateInstallers` command. This command generates the 32 and 64-bit versions at `s2p-aibench/target/builds`. Note that this profile is created to run under Linux environments with `mingw-w64` and `wine` installed (it relies on `i686-w64-mingw32-windres` and `i686-w64-mingw32-gcc` to create some application files packed by NSIS).\n\nTeam\n----\nThis project is an idea and is developed by:\n* Hugo López-Fernández [SING Group](http://www.sing-group.org)\n* José Eduardo Araújo [Bioscope Group](http://www.bioscopegroup.org/)\n* José Luis Capelo Martínez [Bioscope Group](http://www.bioscopegroup.org/)\n* Miguel Reboiro-Jato [SING Group](http://www.sing-group.org)\n* Daniel Glez-Peña [SING Group](http://www.sing-group.org)\n* Florentino Fdez-Riverola [SING Group](http://www.sing-group.org)\n\nCiting\n------\nIf you are using S2P, please, cite us:\n\u003e H. López-Fernández; J.E. Araújo; S. Jorge; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; H.M. Santos; J.L. Capelo-Martínez (2018) [S2P: A Software Tool to Quickly Carry Out Reproducible Biomedical Research Projects Involving 2D-Gel and MALDI-TOF MS Protein Data](https://doi.org/10.1016/j.cmpb.2017.11.024). Computer Methods and Programs in Biomedicine. Volume 155, pp. 1-9. ISSN: 0169-2607\n\u003e\n\u003e H. López-Fernández; J.E. Araújo; D. Glez-Peña; M. Reboiro-Jato; F. Fdez-Riverola; J.L. Capelo-Martínez (2017) [S2P: a desktop application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data](http://dx.doi.org/10.1007/978-3-319-60816-7_1). 11th International Conference on Practical Applications of Computational Biology \u0026 Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616, pp 1-8. Springer, Cham\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsing-group%2Fs2p","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsing-group%2Fs2p","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsing-group%2Fs2p/lists"}