{"id":22753734,"url":"https://github.com/slaclab/cryosparc-docker","last_synced_at":"2025-04-14T15:34:30.223Z","repository":{"id":45551998,"uuid":"149400516","full_name":"slaclab/cryosparc-docker","owner":"slaclab","description":"Docker wrapper for cryosparc","archived":false,"fork":false,"pushed_at":"2024-10-22T03:45:21.000Z","size":52,"stargazers_count":7,"open_issues_count":2,"forks_count":3,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-03-28T04:27:17.586Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/slaclab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-09-19T06:09:21.000Z","updated_at":"2025-02-10T14:14:54.000Z","dependencies_parsed_at":"2024-03-12T00:36:46.499Z","dependency_job_id":"5cf969e8-4d5c-4975-bb11-4bebb2bc0fcf","html_url":"https://github.com/slaclab/cryosparc-docker","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/slaclab%2Fcryosparc-docker","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/slaclab%2Fcryosparc-docker/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/slaclab%2Fcryosparc-docker/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/slaclab%2Fcryosparc-docker/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/slaclab","download_url":"https://codeload.github.com/slaclab/cryosparc-docker/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248906601,"owners_count":21181191,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-11T06:12:55.678Z","updated_at":"2025-04-14T15:34:30.187Z","avatar_url":"https://github.com/slaclab.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"# docker image for cryosparc v2\n\nYou first need to obtain a license for cryosparc via https://cryosparc.com/download/ and cat it into a location that so that the docker build process can pick it up:\n\n```\nexport CRYOSPARC_LICENSE_ID=\u003cBLAH\u003e\nmake license\n```\n\nAll this really does is to put it into a text file under .secret.\n\nThen to actually build the image:\n\n```\nmake build\n```\n    \nYou can change the version to be installed via environment variables, eg to install\n\n```\nCRYOSPARC_VERSION=4.4.0 CRYOSPARC_PATCH=231114 make build\n```\n\n\nDeveloper\n===\n    \nrun (for testing) via\n\n    docker run -e CRYOSPARC_LICENSE_ID=${CRYOSPARC_LICENSE_ID} \\\n        -e JUPYTERHUB_USER=ytl -e EXTERNAL_UID=7017 \\\n        -e EXTERNAL_GROUPS=sf:1051,cryo-data:3591,bd:1124 \\\n        -e HOMEDIRS=/gpfs/slac/cryo/fs1/u/ \\\n        -v /gpfs/slac/cryo/fs1/u/ytl/cryosparc-v2/:/gpfs/slac/cryo/fs1/u/ \\\n        -v /gpfs/slac/cryo/fs1/exp/:/gpfs/slac/cryo/fs1/exp/ \\\n        -v /scratch:/scratch \\\n        -p 39000:39000 -p 39001:39001 -p 39002:39002 -p 39003:39003 -p 39004:39004 \\\n        slaclab/cryosparc-docker:2.2.0\n\nnotes\n\n- to enable access to file storage, the container will drop privs to that defined by JUPYTERHUB_USER, EXTERNAL_UID and EXTERNAL_GROUPS.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fslaclab%2Fcryosparc-docker","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fslaclab%2Fcryosparc-docker","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fslaclab%2Fcryosparc-docker/lists"}