{"id":32563031,"url":"https://github.com/smithlabcode/radmeth","last_synced_at":"2025-10-29T02:56:25.718Z","repository":{"id":15461944,"uuid":"18195074","full_name":"smithlabcode/radmeth","owner":"smithlabcode","description":null,"archived":false,"fork":false,"pushed_at":"2014-05-01T22:47:02.000Z","size":358,"stargazers_count":3,"open_issues_count":1,"forks_count":1,"subscribers_count":14,"default_branch":"master","last_synced_at":"2025-04-01T00:29:55.675Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/smithlabcode.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-03-27T23:31:05.000Z","updated_at":"2022-06-23T14:29:19.000Z","dependencies_parsed_at":"2022-08-27T10:52:18.593Z","dependency_job_id":null,"html_url":"https://github.com/smithlabcode/radmeth","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/smithlabcode/radmeth","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smithlabcode%2Fradmeth","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smithlabcode%2Fradmeth/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smithlabcode%2Fradmeth/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smithlabcode%2Fradmeth/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smithlabcode","download_url":"https://codeload.github.com/smithlabcode/radmeth/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smithlabcode%2Fradmeth/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281549786,"owners_count":26520515,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-29T02:00:06.901Z","response_time":59,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-10-29T02:56:11.109Z","updated_at":"2025-10-29T02:56:25.706Z","avatar_url":"https://github.com/smithlabcode.png","language":"C++","readme":"RADMeth: Regression Analysis of Differential Methylation\n========================================================\n\nRADMeth: Regression Analysis of Differential Methilation is a software for \ncomputing individual differentially methylated sites and genomic regions in \nwhole genome bisulfite sequencing (WGBS) data.\n\nContact Information\n-------------------\n\nEgor Dolzhenko\ndolzhenk@usc.edu\nhttp://smithlabresearch.org/\n\nInstallation\n------------\n*Before attempting to compile RADMeth please make sure that GNU Scientific \nLibrary (http://www.gnu.org/software/gsl/) is installed on your system*\nAlternatively, you can download pre-compiled binaries for either Linux or Mac \nfrom http://smithlabresearch.org/software/radmeth/\n\nTo compile RADMeth, enter the program's root directory (e.g. radmeth/) and  \nexecute\n\n\u003e make\n\nAfter the compilation, the binaries can be found in radmeth/bin/\n\nUsage\n-----\n\nPlease see the manual, which can be obtained at \nhttp://smithlabresearch.org/software/radmeth/\n\nLicense\n-------\nCopyright (C) 2013 University of Southern California and\n               Egor Dolzhenko\n               Andrew D Smith\n\n    Authors: Andrew D. 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