{"id":18818407,"url":"https://github.com/smithsonian/gbif-dataset-explorer","last_synced_at":"2025-08-09T07:24:22.239Z","repository":{"id":56934362,"uuid":"259989027","full_name":"Smithsonian/GBIF-Dataset-Explorer","owner":"Smithsonian","description":"R Package to explore datasets from the biodivesity aggregator GBIF. Digitization Program Office, OCIO","archived":false,"fork":false,"pushed_at":"2023-03-20T18:10:12.000Z","size":774,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-01-30T13:36:52.817Z","etag":null,"topics":["biodiversity-informatics","data-issues","gbif","gbif-data","occurrence","shiny","shiny-r"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Smithsonian.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2020-04-29T17:04:40.000Z","updated_at":"2021-11-23T16:02:36.000Z","dependencies_parsed_at":"2023-09-26T10:17:00.541Z","dependency_job_id":null,"html_url":"https://github.com/Smithsonian/GBIF-Dataset-Explorer","commit_stats":{"total_commits":23,"total_committers":1,"mean_commits":23.0,"dds":0.0,"last_synced_commit":"9320f67829518d24acb71a8439149c3d6258f418"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Smithsonian%2FGBIF-Dataset-Explorer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Smithsonian%2FGBIF-Dataset-Explorer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Smithsonian%2FGBIF-Dataset-Explorer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Smithsonian%2FGBIF-Dataset-Explorer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Smithsonian","download_url":"https://codeload.github.com/Smithsonian/GBIF-Dataset-Explorer/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239753733,"owners_count":19691162,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biodiversity-informatics","data-issues","gbif","gbif-data","occurrence","shiny","shiny-r"],"created_at":"2024-11-08T00:16:38.863Z","updated_at":"2025-02-20T00:20:06.247Z","avatar_url":"https://github.com/Smithsonian.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# GBIF-Dataset-Explorer (gde)\n\nR Package to explore datasets from the biodivesity aggregator GBIF.\n\nOnce a DwC dataset is loaded, you can explore the issues and data values using a Shiny UI. \n\n![Screenshot of the Shiny app](inst/gde-screenshot-thumb.png?raw=true \"Screenshot of the Shiny app\")\n\n## Load data from a DwC download\n\n1. Install the package from CRAN: `install.packages(\"gde\")`\n1. Download a DarwinCore zip file from GBIF\n1. Run the function `gde::load_gbif_dwc(zipfile = \"000000.zip\", tmpdir = \"tmp\")`, editing the arguments as needed\n\nThis step might take a while, depending on the size of the download and the specs of your computer.\n\n## Run the app locally\n\nAfter loading the data to the database, run the Shiny app using:\n\n1. Run using: `gde::launchApp()`\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsmithsonian%2Fgbif-dataset-explorer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsmithsonian%2Fgbif-dataset-explorer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsmithsonian%2Fgbif-dataset-explorer/lists"}