{"id":30665259,"url":"https://github.com/spherotob/gcopt","last_synced_at":"2025-08-31T20:15:40.938Z","repository":{"id":201332960,"uuid":"119040294","full_name":"Spherotob/gcOpt","owner":"Spherotob","description":"Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.","archived":false,"fork":false,"pushed_at":"2019-11-21T15:20:54.000Z","size":47,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2023-10-19T18:54:16.194Z","etag":null,"topics":["constraint-based-modeling","metabolic-engineering","systems-biology"],"latest_commit_sha":null,"homepage":"","language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Spherotob.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-01-26T10:44:33.000Z","updated_at":"2023-10-19T19:18:16.703Z","dependencies_parsed_at":null,"dependency_job_id":"f3c02e60-5704-412f-8be5-dd39117e2591","html_url":"https://github.com/Spherotob/gcOpt","commit_stats":null,"previous_names":["spherotob/gcopt"],"tags_count":1,"template":null,"template_full_name":null,"purl":"pkg:github/Spherotob/gcOpt","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Spherotob%2FgcOpt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Spherotob%2FgcOpt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Spherotob%2FgcOpt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Spherotob%2FgcOpt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Spherotob","download_url":"https://codeload.github.com/Spherotob/gcOpt/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Spherotob%2FgcOpt/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273032934,"owners_count":25034067,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-31T02:00:09.071Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["constraint-based-modeling","metabolic-engineering","systems-biology"],"created_at":"2025-08-31T20:15:36.203Z","updated_at":"2025-08-31T20:15:40.931Z","avatar_url":"https://github.com/Spherotob.png","language":"MATLAB","funding_links":[],"categories":[],"sub_categories":[],"readme":"# gcOpt\nDetermination of product-growth-coupled strain designs employing stoichiometric metabolic models.\n\nFor an introduction to gcOpt, open and run \"gcOpt_Example.m\".\n\nUsage of Matlab 2016b (https://de.mathworks.com/products/matlab.html) or later versions as well as the gurobi 7 (www.gurobi.com/) solver are recommended.\nCOBRA toolbox is additionally needed (https://opencobra.github.io/cobratoolbox/stable/)\n\n[![DOI](https://zenodo.org/badge/119040294.svg)](https://zenodo.org/badge/latestdoi/119040294)\n\n\nThe content of this repository is licensed under a MIT License.\n\nFor a detailed description of the algorithm refer to the corresponding publication:\u003cbr/\u003e\nDetermination of growth-coupling strategies and their underlying principles\u003cbr/\u003e\nAlter, T. B.; Ebert, B. E.\u003cbr/\u003e\nBMC Bioinformatics\u003cbr/\u003e\nhttps://doi.org/10.1186/s12859-019-2946-7\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fspherotob%2Fgcopt","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fspherotob%2Fgcopt","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fspherotob%2Fgcopt/lists"}