{"id":18422491,"url":"https://github.com/sri-csl/datum","last_synced_at":"2025-08-21T01:06:56.270Z","repository":{"id":137662106,"uuid":"91382255","full_name":"SRI-CSL/datum","owner":"SRI-CSL","description":"A parser for biological experiment shorthand.","archived":false,"fork":false,"pushed_at":"2020-10-07T22:39:43.000Z","size":750,"stargazers_count":2,"open_issues_count":0,"forks_count":2,"subscribers_count":16,"default_branch":"master","last_synced_at":"2025-04-13T14:51:05.725Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Clojure","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SRI-CSL.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-05-15T20:34:11.000Z","updated_at":"2020-08-25T12:02:16.000Z","dependencies_parsed_at":null,"dependency_job_id":"6463355b-74fd-4362-9855-e0a216213ff5","html_url":"https://github.com/SRI-CSL/datum","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/SRI-CSL/datum","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SRI-CSL%2Fdatum","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SRI-CSL%2Fdatum/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SRI-CSL%2Fdatum/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SRI-CSL%2Fdatum/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SRI-CSL","download_url":"https://codeload.github.com/SRI-CSL/datum/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SRI-CSL%2Fdatum/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271410699,"owners_count":24754776,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-20T02:00:09.606Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T04:30:25.109Z","updated_at":"2025-08-21T01:06:56.246Z","avatar_url":"https://github.com/SRI-CSL.png","language":"Clojure","funding_links":[],"categories":[],"sub_categories":[],"readme":"# datum\n\nA parser for the [Human Readable Datum Format](http://pl.csl.sri.com/datumkb.html) used by [Pathway Logic](http://pl.csl.sri.com/index.html). Takes in a file or directory of datums, does some basic sanity checking, and emits JSON.\n\n## Usage\n\n    $ java -jar datum-0.1.0-standalone.jar [args] [files/directories]\n\n## Options\n\n    Options:\n      -e, --errors         Print errors\n      -o, --ops-file FILE  Provide an external ops json file\n      -j, --json           Print parsed datums as JSON\n      -J, --pretty-json    Pretty-print parsed datums as JSON\n      -D, --duplicates     Print a list of duplicate datums\n      -m, --merge          Merge datums that only differ in extras.\n\n## Ops\n\nFor sanity and type checking, you will need an `ops file`, which is a JSON file containing a Maude type hierarchy of relevant sorts and ops. The parser is bundled with some default ops. Instructions for generating your own TBD.\n\n## License\n\nReleased under the MIT license. See LICENSE for the full license.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsri-csl%2Fdatum","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsri-csl%2Fdatum","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsri-csl%2Fdatum/lists"}