{"id":19829128,"url":"https://github.com/ssi-dk/bifrost_sp_cdiff","last_synced_at":"2026-07-17T03:05:04.356Z","repository":{"id":244781139,"uuid":"816219179","full_name":"ssi-dk/bifrost_sp_cdiff","owner":"ssi-dk","description":"Cdiff related analysis for the SOFI platform.","archived":false,"fork":false,"pushed_at":"2025-02-19T08:33:28.000Z","size":51,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-02-19T09:29:46.136Z","etag":null,"topics":["bifrost","cdiff","sofi","typing"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ssi-dk.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-17T09:33:05.000Z","updated_at":"2024-12-18T08:12:17.000Z","dependencies_parsed_at":"2024-12-09T16:21:28.335Z","dependency_job_id":"a75172d8-bbf9-4150-940a-afa18fde699a","html_url":"https://github.com/ssi-dk/bifrost_sp_cdiff","commit_stats":null,"previous_names":["ssi-dk/bifrost_sp_cdiff"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ssi-dk%2Fbifrost_sp_cdiff","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ssi-dk%2Fbifrost_sp_cdiff/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ssi-dk%2Fbifrost_sp_cdiff/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ssi-dk%2Fbifrost_sp_cdiff/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ssi-dk","download_url":"https://codeload.github.com/ssi-dk/bifrost_sp_cdiff/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241188865,"owners_count":19924700,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bifrost","cdiff","sofi","typing"],"created_at":"2024-11-12T11:17:52.161Z","updated_at":"2025-10-17T22:53:31.078Z","avatar_url":"https://github.com/ssi-dk.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# bifrost_sp_cdiff\nThis component runs given a sample_id already added into the bifrostDB. If the sample is registered as *Clostridiodes difficile*, it should pull the paired reads, the contigs, and do the typing according to [cdiff_fbi](https://github.com/ssi-dk/cdiff_fbi)\n\n## How to launch\n```bash\ngit clone https://github.com/ssi-dk/bifrost_sp_cdiff.git\ncd bifrost_sp_cdiff\nbash install.sh -i LOCAL\nconda activate bifrost_sp_cdiff_vx.x.x\nexport BIFROST_INSTALL_DIR='/your/path/'\nBIFROST_DB_KEY=\"/your/key/here/\" python -m bifrost_sp_cdiff -h\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fssi-dk%2Fbifrost_sp_cdiff","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fssi-dk%2Fbifrost_sp_cdiff","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fssi-dk%2Fbifrost_sp_cdiff/lists"}