{"id":42060235,"url":"https://github.com/statgen/encore","last_synced_at":"2026-01-26T07:38:56.072Z","repository":{"id":7874145,"uuid":"56720070","full_name":"statgen/encore","owner":"statgen","description":"Encore Analysis Server","archived":false,"fork":false,"pushed_at":"2025-05-01T15:06:28.000Z","size":2113,"stargazers_count":13,"open_issues_count":5,"forks_count":6,"subscribers_count":10,"default_branch":"master","last_synced_at":"2025-05-01T16:23:43.596Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/statgen.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2016-04-20T20:51:13.000Z","updated_at":"2023-06-21T22:02:17.000Z","dependencies_parsed_at":"2023-01-13T14:32:11.713Z","dependency_job_id":"a66cf124-52d4-4f6f-9924-21994ec9b1c5","html_url":"https://github.com/statgen/encore","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/statgen/encore","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fencore","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fencore/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fencore/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fencore/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statgen","download_url":"https://codeload.github.com/statgen/encore/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fencore/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28769853,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-26T06:37:25.426Z","status":"ssl_error","status_checked_at":"2026-01-26T06:37:23.039Z","response_time":59,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-26T07:38:55.365Z","updated_at":"2026-01-26T07:38:56.056Z","avatar_url":"https://github.com/statgen.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Encore \n\nEncore allows scientists to test hypotheses using large scale sequencing data\nwhile hiding many of the complicated technical issues associated with working\non terabyte scale data.  In addition to performing the most common association\ntests for single variants and groups of rare variants, Encore enables users to\nannotate, share and interact with results.  Access to Encore is controlled by a\nwhite list of users who can upload phenotypes and request analyses.  All\nper-variant and per-gene summary statistics are returned.  To maintain\nconfidentiality of research participant data, individual level data cannot be\ndownloaded.  By optimizing the most common analyses and providing rich ways to\ninteract with results, Encore offers an exciting platform to investigate\ngenetic hypotheses.\n\n# Installing python modules\n\nTo install all the required python modules into a virtal environment\n\n     python3 -m venv venv/\n     source venv/bin/activate\n     pip install -r requirements.txt\n\n# Run dev instance\n\nTo run a simple dev instance of Encore, you can run\n\n    ./rundev.sh\n\n# Apache Configuration\n\nCurrently Encore is deployed using WSGI with apache. You can \ninstall apache and the WSGI module with\n\n    apt-get install apache2 python-setuptools libapache2-mod-wsgi-py3 python3-dev libmysqlclient-dev\n\nA sample wsgi file is included at encore.wsgi.example. You should\ncopy this file to encore.wsgi and fill in the correct path\nfor your server.\n\nA sample apache conf file is included at encore.conf.example. You should\ncopy this file to /etc/apache2/sites-available/encore.conf and\nfill in the correct URL and path for your server.\n\nYou can enable the configuration with\n\n    sudo a2ensite encore\n    sudo systemctl restart apache2\n\n# Email configuration\n\nEncore will try to send email via localhost. You can set up\npostfix to send or redirect these emails how you like. You can\ninstall postfix with\n\n    sudo apt-get install postfix\n\nA simple installation would just choose \"Internet Site\" and set\n\n    inet_interfaces = localhost\n\nin the `/etc/postfix/main.cf` config file.\n\n\n\n# Building Executable tools\n\n     mkdir build\n     cd build\n     cmake ..\n     make\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstatgen%2Fencore","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstatgen%2Fencore","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstatgen%2Fencore/lists"}