{"id":42060227,"url":"https://github.com/statgen/locuszoom-standalone","last_synced_at":"2026-01-26T07:38:55.164Z","repository":{"id":140593124,"uuid":"52999075","full_name":"statgen/locuszoom-standalone","owner":"statgen","description":"Create regional association plots from GWAS or meta-analysis","archived":false,"fork":false,"pushed_at":"2020-01-21T19:41:45.000Z","size":470,"stargazers_count":59,"open_issues_count":15,"forks_count":19,"subscribers_count":13,"default_branch":"master","last_synced_at":"2025-01-13T00:46:21.957Z","etag":null,"topics":["bioinformatics","genetics","visualization"],"latest_commit_sha":null,"homepage":"http://locuszoom.org/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/statgen.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2016-03-02T21:51:44.000Z","updated_at":"2024-09-17T15:48:01.000Z","dependencies_parsed_at":"2023-05-03T20:02:14.133Z","dependency_job_id":null,"html_url":"https://github.com/statgen/locuszoom-standalone","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/statgen/locuszoom-standalone","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Flocuszoom-standalone","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Flocuszoom-standalone/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Flocuszoom-standalone/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Flocuszoom-standalone/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statgen","download_url":"https://codeload.github.com/statgen/locuszoom-standalone/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Flocuszoom-standalone/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28769853,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-26T06:37:25.426Z","status":"ssl_error","status_checked_at":"2026-01-26T06:37:23.039Z","response_time":59,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genetics","visualization"],"created_at":"2026-01-26T07:38:54.447Z","updated_at":"2026-01-26T07:38:55.155Z","avatar_url":"https://github.com/statgen.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# LocusZoom Standalone\n\nThis repository is for the command line (standalone) version of LocusZoom, an application for creating regional plots from genome-wide association studies built in Python and R.\n\nDocumentation for this program is available on our wiki: http://genome.sph.umich.edu/wiki/LocusZoom_Standalone\n\n# Status\n\nThis version of LocusZoom is no longer under active development. Bug fixes and small updates may be made, though it is unlikely. \n\nA new web-based interactive version of LocusZoom is currently under active development. Please see the [locuszoom.js github site](https://github.com/statgen/locuszoom/) for information on using it on your own sites, or see a preview of it in action at [locuszoom.org](http://locuszoom.org/locuszoomjs.php). \n\n# Releases\n\n| Build                                                                                               | Version | Date       | Size |\n|-----------------------------------------------------------------------------------------------------|---------|------------|------|\n| [Program + database + LD files](https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.4.tgz) | 1.4     | 2017-05-01 | 23G  |\n| [Program + database](https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.4_nold.tgz)       | 1.4     | 2017-05-01 | 16G  |\n| [Program only](https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.4_srconly.tgz)          | 1.4     | 2017-05-01 | 86K  |\n|                                                                                                     |         |            |      |\n| [Program + database + LD files](https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.3.tgz) | 1.3     | 2014-06-20 | 10G  |\n| [Program + database](https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.3_nold.tgz)       | 1.3     | 2014-06-20 | 4.3G |\n| [Program only](https://statgen.sph.umich.edu/locuszoom/download/locuszoom_1.3_srconly.tgz)          | 1.3     | 2014-06-20 | 79K  |\n\nDatabase contains required data for LocusZoom to function, though you can skip it if you are already creating your own. \n\nLD files are entirely optional - you can calculate LD instead from your own genotype files (`--ld-vcf`), or not at all (`--no-ld`). \n\nA full list of changes for each version can be found in the [changelog](docs/CHANGELOG.md). \n\n# Contact\n\nContact/support options:\n * Submit an issue to the repository: https://github.com/statgen/locuszoom-standalone/issues\n * Post a message to the Google Group: https://groups.google.com/forum/#!forum/locuszoom\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstatgen%2Flocuszoom-standalone","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstatgen%2Flocuszoom-standalone","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstatgen%2Flocuszoom-standalone/lists"}