{"id":42060273,"url":"https://github.com/statgen/raremetal","last_synced_at":"2026-01-26T07:39:00.055Z","repository":{"id":19928806,"uuid":"87327318","full_name":"statgen/raremetal","owner":"statgen","description":"A flexible tool for meta-analysis","archived":false,"fork":false,"pushed_at":"2024-07-31T19:55:26.000Z","size":71667,"stargazers_count":9,"open_issues_count":30,"forks_count":8,"subscribers_count":11,"default_branch":"master","last_synced_at":"2025-01-13T00:46:14.455Z","etag":null,"topics":["gwas"],"latest_commit_sha":null,"homepage":null,"language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/statgen.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-04-05T15:40:48.000Z","updated_at":"2024-11-17T02:34:07.000Z","dependencies_parsed_at":"2022-07-23T14:17:48.190Z","dependency_job_id":"b2e906e3-e30f-424f-8562-978129b734a4","html_url":"https://github.com/statgen/raremetal","commit_stats":null,"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/statgen/raremetal","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fraremetal","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fraremetal/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fraremetal/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fraremetal/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/statgen","download_url":"https://codeload.github.com/statgen/raremetal/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/statgen%2Fraremetal/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28769853,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-26T06:37:25.426Z","status":"ssl_error","status_checked_at":"2026-01-26T06:37:23.039Z","response_time":59,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["gwas"],"created_at":"2026-01-26T07:38:58.385Z","updated_at":"2026-01-26T07:39:00.047Z","avatar_url":"https://github.com/statgen.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"Raremetal: A tool for rare variants meta-analysis\n\n(c) 2012-2019 Shuang Feng, Dajiang Liu, Sai Chen, Gonçalo Abecasis\n\nFor more information, please see the [RAREMETAL wiki](http://genome.sph.umich.edu/wiki/RAREMETAL).\n\n## Installation\n1. Clone this repository\n2. Open a terminal and change to the directory containing this README file.\n3. Enter the following sequence of commands to download dependencies and build the code:\n \n```bash\n$ cget install -f requirements.txt\n$ mkdir build \u0026\u0026 cd build\n$ cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_TOOLCHAIN_FILE=../cget/cget/cget.cmake -DBUILD_TESTS=1 ..\n$ make\n```\n\nTo run unit tests, ensure that you have run cmake with `-DBUILD_TESTS=1` and built at least once, \nthen run `make` or `ctest --verbose`. These unit tests were written on Mac OS and you may encounter small differences \ndue to system precision on other platforms.\n\nIf you encounter problems while building, see the [wiki instructions](https://genome.sph.umich.edu/wiki/RAREMETAL_DOWNLOAD_%26_BUILD) \nand [FAQ](https://genome.sph.umich.edu/wiki/RAREMETAL_FAQ) for more information.\n\n### Requirements\nRaremetal requires the following libraries to build. These should already be installed on most scientific \ncomputing clusters.\n\n- libRMath (The R math library. If not installed, use `apt-get install r-mathlib` on ubuntu or `brew install r` \n    on Mac OS)\n- zlib (`apt-get install zlib1g-dev` on Ubuntu)\n\n### Troubleshooting\nOn Mac OS, installing R as a standalone package is not sufficient to use libRMath in other executables. \nConsider `brew install r` or [r-devel](https://r.research.att.com/) in that case.   \n\nOn Mac OS, some `cget` dependencies (such as xz) may fail to install. In certain cases, this can be fixed by running an \nOS-version-specific command similar to the below:\n\n`$ open /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg`\n\n## Changes\nNewest version: v4.15.0 released March 14, 2019.\nView change log at: http://genome.sph.umich.edu/wiki/RAREMETAL_Change_Log\n\n### RAREMETAL2\nWe are also working on a beta version that provides new features and options- RAREMETAL2. \n\nThis code is still in the experimental stages, but a full release is planned in the future. See:\nhttps://github.com/statgen/Raremetal2\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstatgen%2Fraremetal","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstatgen%2Fraremetal","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstatgen%2Fraremetal/lists"}