{"id":26811407,"url":"https://github.com/stephanmg/vrl-swc-density-vis","last_synced_at":"2025-03-30T01:38:35.071Z","repository":{"id":22879763,"uuid":"26227780","full_name":"stephanmg/VRL-SWC-Density-Vis","owner":"stephanmg","description":"Density visualization plugin for neuronal morphologies","archived":false,"fork":false,"pushed_at":"2021-07-29T13:47:01.000Z","size":42033,"stargazers_count":1,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"master","last_synced_at":"2023-08-03T18:54:02.007Z","etag":null,"topics":["density-visualization","java","morphologies","neuronal","swc","vrl-plugin","vrl-studio"],"latest_commit_sha":null,"homepage":"http://www.neurobox.eu","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"artistic-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/stephanmg.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null}},"created_at":"2014-11-05T16:12:23.000Z","updated_at":"2023-08-03T18:54:02.008Z","dependencies_parsed_at":"2022-08-21T15:50:10.014Z","dependency_job_id":null,"html_url":"https://github.com/stephanmg/VRL-SWC-Density-Vis","commit_stats":null,"previous_names":[],"tags_count":12,"template":null,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stephanmg%2FVRL-SWC-Density-Vis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stephanmg%2FVRL-SWC-Density-Vis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stephanmg%2FVRL-SWC-Density-Vis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stephanmg%2FVRL-SWC-Density-Vis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stephanmg","download_url":"https://codeload.github.com/stephanmg/VRL-SWC-Density-Vis/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246266276,"owners_count":20749754,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["density-visualization","java","morphologies","neuronal","swc","vrl-plugin","vrl-studio"],"created_at":"2025-03-30T01:38:34.532Z","updated_at":"2025-03-30T01:38:35.054Z","avatar_url":"https://github.com/stephanmg.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"VRL-SWC-Density-Vis\n===================\nA [VRL Studio](https://github.com/VRL-Studio/VRL-Studio) plugin for the density visualization and subsequent analysis of stacks of neuronal morphologies specified in the common SWC file format (cf. [*neuromorpho database*](http://neuromorpho.org)) compatible with e. g. Neurolucida, NEURON or GENESIS. By extending the existing [VRL-Density-Vis](https://github.com/NeuroBox3D/VRL-Density-Vis) plugin for the matter in hand, the [VRL-SWC-Density-Vis](https://github.com/stephanmg/VRL-SWC-Density-Vis) plugin integrates flawless within the novel [NeuroBox](http://neurobox.eu/) *3D* toolbox for detailed simulations and analysis in *Computational Neuroscience* (compare the organization [NeuroBox3D](https://github.com/NeuroBox3D)). For a specification of the SWC file format cf. [NeuroLand](http://www.neuronland.org/NLMorphologyConverter/MorphologyFormats/SWC/Spec.html).\n\n# CI and license\n[![Codacy Badge](https://api.codacy.com/project/badge/Grade/1363909ef6d445e7aa758f3b56fa6da5)](https://app.codacy.com/manual/stephan_5/VRL-SWC-Density-Vis?utm_source=github.com\u0026utm_medium=referral\u0026utm_content=stephanmg/VRL-SWC-Density-Vis\u0026utm_campaign=Badge_Grade_Dashboard)\n[![Build status (Linux/OSX)](https://api.travis-ci.org/stephanmg/VRL-SWC-Density-Vis.svg?branch=new_features)](https://travis-ci.org/stephanmg/VRL-SWC-Density-Vis)\n[![Build status (Windows)](https://ci.appveyor.com/api/projects/status/mbp14vk1k591p5jk?svg=true)](https://ci.appveyor.com/project/stephanmg/vrl-swc-density-vis)\n[![Coverage Status](https://coveralls.io/repos/stephanmg/VRL-SWC-Density-Vis/badge.png)](https://coveralls.io/r/stephanmg/VRL-SWC-Density-Vis)\n[![License: Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](https://opensource.org/licenses/Artistic-2.0)\n\n# Literature\nYou are obliged to cite the following reference (See in Bibtex format [here](https://github.com/stephanmg/VRL-SWC-Density-Vis/dvp.bib)) if you use the software to analyze and publish results: *Grein Stephan, Qi Guanxiao, Queisser Gillian (2020): Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis in Frontiers in Computational Neuroscience for From Neuronal Network to Artificial Neural Network: Structure, Function and Intelligence*\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstephanmg%2Fvrl-swc-density-vis","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstephanmg%2Fvrl-swc-density-vis","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstephanmg%2Fvrl-swc-density-vis/lists"}