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vagrant\nbrew cask install vagrant-manager\n```\n\nIf you have trouble install Vagrant with homebrew, try using [this](https://releases.hashicorp.com/vagrant/2.0.1/vagrant_2.0.1_x86_64.dmg).\n\n# Creating the Container\n\nThe workflow for creating a Singularity container on a Mac through Vagrant is saved in the included `Makefile`.\n\nMake the container by running:\n\n```bash\nmake container\n```\n\nAnd run a test on the created container with\n\n```bash\nmake test\n```\n\n## Output\n\nIf everything worked, the following files should be created:\n\n- `singularity-vm/image/singularity-container-samtools`: the Singularity container file for samtools\n\n- `singularity-vm/image/samtools-version.txt`: the output from running samtools inside the container, should look like this:\n\n```\nsamtools 1.6\nUsing htslib 1.6\nCopyright (C) 2017 Genome Research Ltd.\n```\n\n# Resources\n\nhttp://singularity.lbl.gov/install-mac\n\nhttps://app.vagrantup.com/singularityware/boxes/singularity-2.4\n\nhttps://releases.hashicorp.com/vagrant/2.0.1/vagrant_2.0.1_x86_64.dmg\n\nhttp://singularity.lbl.gov/docs-build-container\n\nhttp://singularity.lbl.gov/docs-recipes\n\nhttps://github.com/qbicsoftware/qbic-singularity-samtools\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstevekm%2Fsingularity-samtools-demo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstevekm%2Fsingularity-samtools-demo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstevekm%2Fsingularity-samtools-demo/lists"}