{"id":21358350,"url":"https://github.com/stm/holepunch-compendium","last_synced_at":"2026-02-03T22:31:55.096Z","repository":{"id":87988350,"uuid":"601064820","full_name":"stm/holepunch-compendium","owner":"stm","description":null,"archived":false,"fork":false,"pushed_at":"2023-02-13T11:19:02.000Z","size":516,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-16T06:16:51.646Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/stm.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-02-13T09:43:24.000Z","updated_at":"2023-02-13T09:43:32.000Z","dependencies_parsed_at":"2023-05-22T06:15:13.774Z","dependency_job_id":null,"html_url":"https://github.com/stm/holepunch-compendium","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":"r-rse/holepunch-compendium-tmpl","purl":"pkg:github/stm/holepunch-compendium","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stm%2Fholepunch-compendium","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stm%2Fholepunch-compendium/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stm%2Fholepunch-compendium/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stm%2Fholepunch-compendium/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stm","download_url":"https://codeload.github.com/stm/holepunch-compendium/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stm%2Fholepunch-compendium/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":264384390,"owners_count":23599612,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-22T05:15:47.215Z","updated_at":"2026-02-03T22:31:50.049Z","avatar_url":"https://github.com/stm.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\u003c!-- badges: start --\u003e\n[![Launch Rstudio Binder](http://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/stm/holepunch-compendium/main?urlpath=rstudio)\n\u003c!-- badges: end --\u003e\n\n```{r, echo = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"README-\"\n)\n```\n\n# holepunch-compendium\n\nThis repository contains the data and code for our reproduction paper:\n\n\u003e Krystalli, A \u0026 Boettiger, C, (2018). _Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools_.  \u003chttps://doi.org/{DOI-to-compendium}\u003e\n\nOur reproduction pre-print is online here:\n\n\u003e Krystalli, A \u0026 Boettiger, C, (2018). _Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools_, Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/{DOI-to-paper}\u003e\n\n\n### How to cite\n\nPlease cite this compendium as:\n\n\u003e Krystalli, A, (`r format(Sys.Date(), \"%Y\")`). _Compendium of R code and data for 'Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools'_. Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/{DOI-to-compendium}\u003e\n\n### How to download or install\n\nYou can download the compendium as a zip from from this URL: \u003chttps://github.com/r-rse/holepunch-compendium/archive/master.zip\u003e\n\n\n### Reproducing the paper\n\nThe paper can be found at `analysis/paper/paper.Rmd`. Open the file and\nclick on **knit** to reproduce the paper. Or run:\n\n``` r\nrmarkdown::render(file.path(\"analysis\", \"paper\", \"paper.Rmd\"))\n```\n\n\n\n### Licenses\n\n**Text and figures :**  [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/) Copyright (c) 2018 Carl Boettiger.\n\n**Code :** [MIT](LICENSE.md) Copyright (c) 2018 Anna Krystalli and Carl Boettiger.\n\n**Data :** [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/), Copyright (c) 2018 Carl Boettiger.\n\n### Contributions\n\nWe welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstm%2Fholepunch-compendium","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstm%2Fholepunch-compendium","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstm%2Fholepunch-compendium/lists"}