{"id":29492519,"url":"https://github.com/stuartmac/jabaws-docker-builds","last_synced_at":"2026-02-20T22:39:44.090Z","repository":{"id":301244603,"uuid":"962875841","full_name":"stuartmac/JABAWS-Docker-Builds","owner":"stuartmac","description":null,"archived":false,"fork":false,"pushed_at":"2025-07-08T14:23:58.000Z","size":37,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-07-08T15:34:04.644Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Dockerfile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/stuartmac.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-04-08T20:07:09.000Z","updated_at":"2025-06-26T12:41:37.000Z","dependencies_parsed_at":"2025-06-25T22:33:09.265Z","dependency_job_id":"ca0f7342-f832-4992-9590-5c711395faa5","html_url":"https://github.com/stuartmac/JABAWS-Docker-Builds","commit_stats":null,"previous_names":["stuartmac/jabaws-docker-builds"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/stuartmac/JABAWS-Docker-Builds","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stuartmac%2FJABAWS-Docker-Builds","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stuartmac%2FJABAWS-Docker-Builds/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stuartmac%2FJABAWS-Docker-Builds/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stuartmac%2FJABAWS-Docker-Builds/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/stuartmac","download_url":"https://codeload.github.com/stuartmac/JABAWS-Docker-Builds/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/stuartmac%2FJABAWS-Docker-Builds/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265441053,"owners_count":23765892,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-07-15T15:06:01.603Z","updated_at":"2025-10-24T09:36:10.932Z","avatar_url":"https://github.com/stuartmac.png","language":"Dockerfile","funding_links":[],"categories":[],"sub_categories":[],"readme":"# JABAWS Docker Build\n\n\u003e TL;DR: Run `./quick-build.sh` to build locally, or  \n\u003e `./multi-platform-build.sh --tag youruser/jabaws:latest` to build and push a cross-platform image.\n\nA comprehensive, multi-architecture Docker build system for JABAWS (Java Bioinformatics Analysis Web Services).\n\n---\n\n## 🚀 Quick Start\n\n### Recommended:\n```bash\n./quick-build.sh\n```\n\n### Alternatives:\n```bash\n./build.sh --tag jabaws:latest                              # Full control\n./dev-build.sh --fast --run                                 # Dev workflow\n./multi-platform-build.sh --tag myregistry/jabaws:latest    # Multi-platform\n```\n\n---\n\n## 🛠️ Build Scripts Overview\n\n### `quick-build.sh`\nOne-command build with sensible defaults.\n\n### `build.sh`\nFull-featured build with options:\n```bash\n./build.sh [OPTIONS]\n  -p, --platform \u003carch\u003e   Target platform (e.g., linux/amd64)\n  -t, --tag \u003ctag\u003e         Image tag (default: jabaws:latest)\n  -c, --clean             Clean build (re-download dependencies)\n  -n, --no-cache          Build without cache\n  -d, --deps-only         Prepare dependencies only\n  -v, --verbose           Verbose output\n      --skip-deps         Skip dependency steps\n      --push              Push image after build\n      --multi-platform    Build for both AMD64 and ARM64\n```\n\n### `dev-build.sh`\nFast iteration and dev support:\n\n```bash\n./dev-build.sh [OPTIONS]\n  -f, --fast     Use cache, skip checks\n  -r, --run      Run after build\n  -s, --stop     Stop running container\n      --logs     Show container logs\n```\n\n### `multi-platform-build.sh`\nCross-architecture builds for registries:\n\n```bash\n./multi-platform-build.sh [OPTIONS]\n  -t, --tag TAG          Image tag (required for registry)\n  -c, --clean            Clean build\n  -n, --no-cache         No cache\n  -v, --verbose          Verbose output\n      --registry REG     Registry prefix\n      --check-only       Check prerequisites only\n```\n\n---\n\n## 🧪 Example Commands\n\n```bash\n./quick-build.sh                               # Default quick build\n./build.sh --clean --tag jabaws:v2.2           # Clean build with custom tag\n./build.sh --platform linux/arm64              # ARM64 build\n./dev-build.sh --fast --run                    # Dev: build \u0026 run\n./dev-build.sh --logs                          # Show logs\n\n# Multi-platform builds (requires registry push)\n./multi-platform-build.sh --tag myuser/jabaws:latest\n./build.sh --multi-platform --push --tag myuser/jabaws:v2.2\n```\n\n---\n\n## 🌐 Multi-Platform Builds\n\nBuild Docker images that work on both Intel/AMD and Apple Silicon architectures:\n\n### Prerequisites for Multi-Platform Builds:\n- Docker with Buildx support (included in Docker Desktop)\n- Access to a Docker registry (Docker Hub, GitHub Container Registry, etc.)\n- Registry authentication (`docker login`)\n\n### Quick Multi-Platform Build:\n```bash\n# Check prerequisites\n./multi-platform-build.sh --check-only\n\n# Build and push to Docker Hub\ndocker login\n./multi-platform-build.sh --tag yourusername/jabaws:latest\n\n# Build and push to GitHub Container Registry  \ndocker login ghcr.io\n./multi-platform-build.sh --tag ghcr.io/yourusername/jabaws:latest\n```\n\n### Using the Main Build Script:\n```bash\n# Multi-platform build (requires --push)\n./build.sh --multi-platform --push --tag yourusername/jabaws:latest\n```\n\n### Benefits:\n- **Universal compatibility**: Single image tag works on both architectures\n- **Automatic selection**: Docker automatically pulls the correct architecture\n- **Performance optimized**: Native compilation for each platform\n- **Simple deployment**: Same `docker run` command works everywhere\n\n---\n\n## 🖥️ Platform Support\n\n| Platform        | Default Target     | Notes                              |\n|----------------|--------------------|------------------------------------|\n| Apple Silicon  | `linux/arm64`      | Native ARM64 for optimal performance |\n| Intel/AMD      | `linux/amd64`      | Native                            |\n| Multi-Platform | `amd64` + `arm64`  | Universal image (requires registry) |\n| Override       | Any supported arch | Use `--platform` option            |\n\n\u003e Performance: Native ARM64 builds on Apple Silicon provide significantly better performance than emulated AMD64.\n\n---\n\n## ▶️ Running the Container\n\n```bash\ndocker run -p 8080:8080 jabaws:latest                      # Standard\ndocker run -d --name jabaws-dev -p 8080:8080 jabaws:latest # Named\nopen http://localhost:8080/jabaws                         # Access\n```\n\n---\n\n## 🔧 Build Architecture\n\nMulti-stage Docker approach:\n1. **tool-builder** – compiles native bioinformatics tools\n2. **war-patcher** – injects binaries into the WAR file\n3. **runtime** – Tomcat 9.0.107 with Java 8 (JABAWS compatibility)\n\nEnsures cross-platform builds and clean runtimes.\n\n---\n\n## ✅ Verified On\n- macOS (Apple Silicon) via Docker Desktop\n- Tomcat 9.0.107 with Java 8 (JABAWS compatibility)\n- Included tools compiled per platform\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuartmac%2Fjabaws-docker-builds","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstuartmac%2Fjabaws-docker-builds","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuartmac%2Fjabaws-docker-builds/lists"}