{"id":16618741,"url":"https://github.com/stuntspt/misc_plotters","last_synced_at":"2026-04-22T01:04:13.212Z","repository":{"id":28940788,"uuid":"32466646","full_name":"StuntsPT/misc_plotters","owner":"StuntsPT","description":"A collection of scripts for plotting several kinds of data","archived":false,"fork":false,"pushed_at":"2016-11-11T22:05:24.000Z","size":112,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-17T20:45:34.631Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/StuntsPT.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-03-18T15:20:40.000Z","updated_at":"2016-06-27T13:14:39.000Z","dependencies_parsed_at":"2022-09-05T18:40:55.376Z","dependency_job_id":null,"html_url":"https://github.com/StuntsPT/misc_plotters","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2Fmisc_plotters","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2Fmisc_plotters/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2Fmisc_plotters/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2Fmisc_plotters/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/StuntsPT","download_url":"https://codeload.github.com/StuntsPT/misc_plotters/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":242980782,"owners_count":20216285,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-12T02:21:22.373Z","updated_at":"2025-12-25T01:03:44.084Z","avatar_url":"https://github.com/StuntsPT.png","language":"Python","readme":"# misc_plotters\nA collection of scripts for plotting several kinds of data.\n\nSome examples of what these scripts produce can be found in the \"examples\" directory.\n\n-------\n\n## Fst_heatmap.R\n\nThis is a dirty script (it's all hardcoded, and uses non-conventional files) to draw the two parts of a Fst plot.\n\n### Input files\n\nThe data utilized in this script can be obtained with [Genepop](http://kimura.univ-montp2.fr/~rousset/), in the output.MIG\n\nThe first part requires a triangular matrix (upper and lower) of pairwise Fst values. Eg.:\n\n       A B C D\n    A  0 2 2 2\n    B  1 0 2 2\n    C  1 1 0 2\n    D  1 1 1 0\n\nWhere the 1's are the pairwise Fst values from one dataset and the 2's are for a different dataset. The diagonal must be filled with 0's.\n\nFor the second part (the line plots) you will require a file with Fst values for each dataset (one value per line). Eg.:\n\n    1\n    1\n    1\n    1\n    1\n\nTo use the script, just replace the hard-coded paths with the path to your own files.\n\n### Requirements\n\nThis script requires the \"corrplot\" package. You can download it from CRAN.\n\n-------\n\n## Mantel_plotter.R\n\nThis script will plot the data used for a Mantel test and the associates correlation line.\nDoes not give a very nice result. It has been abandoned before being really useful.\nStill full hard-coded.\n\n--------\n\n## Correlogram.R\n\nThis script will grab 2 triangular matrices (generated with GenePop), one genetic distance and one of geographic distance and will plot the respective Mantel correlograms.\nFully hard coded.\n\n---------\n\n## map_plotter.R\n\nThis script will plot a measurement of genetic diversity (or any value as for that matter) in a coordinate system, along with the interpolation between each data point.\nHard coded and poorly documented (but the code should be simple enough to understand). Use at your own risk.\n\n--------\n\n## Allele_freq_plotter.py\n\nNot yet documented. Sorry for any inconvenience.\n\n\n## p-value-freqs.py\n\nThis script will parse a single column file with one p-value (or q-value) per line and plot a frequency histogram.\nRequirements and usage can be found within the script itself.\n\n## License\n\nGPLv3\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuntspt%2Fmisc_plotters","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstuntspt%2Fmisc_plotters","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuntspt%2Fmisc_plotters/lists"}