{"id":16618728,"url":"https://github.com/stuntspt/ncbi_mass_downloader","last_synced_at":"2025-03-23T14:31:17.395Z","repository":{"id":8661263,"uuid":"10315829","full_name":"StuntsPT/NCBI_Mass_Downloader","owner":"StuntsPT","description":"A program to download large amounts of sequences from NCBI databases.","archived":false,"fork":false,"pushed_at":"2025-02-13T12:35:06.000Z","size":1377,"stargazers_count":19,"open_issues_count":4,"forks_count":7,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-03-18T21:11:16.745Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/StuntsPT.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2013-05-27T13:55:52.000Z","updated_at":"2025-02-13T12:33:30.000Z","dependencies_parsed_at":"2022-07-08T06:17:37.065Z","dependency_job_id":"6b61df57-13c4-432a-8b66-d3a24a350eca","html_url":"https://github.com/StuntsPT/NCBI_Mass_Downloader","commit_stats":null,"previous_names":[],"tags_count":22,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FNCBI_Mass_Downloader","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FNCBI_Mass_Downloader/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FNCBI_Mass_Downloader/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FNCBI_Mass_Downloader/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/StuntsPT","download_url":"https://codeload.github.com/StuntsPT/NCBI_Mass_Downloader/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245115794,"owners_count":20563237,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-12T02:21:20.555Z","updated_at":"2025-03-23T14:31:16.962Z","avatar_url":"https://github.com/StuntsPT.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# NCBI Mass Sequence Downloader\n\n\n## Description:\nThis program will download sequences *en masse* from several NCBI databases (at the user's choice).\nAfter the downloading is finished, the program will check the resulting file for any missing sequences and continuously retry the download until all sequences are present in the local file.\n\n![Screenshot](docs/assets/screenshot.png)\n\n[NCBI Data Usage Policies and Disclaimers](https://www.ncbi.nlm.nih.gov/home/about/policies.shtml) may apply to downloaded data.\n\n\n## Documentation:\n[![Documentation Status](https://readthedocs.org/projects/ncbi-mass-sequence-downloader/badge/?version=latest)](http://ncbi-mass-sequence-downloader.readthedocs.io/en/latest/?badge=latest)\n\nThe complete manual can be found on [readthedocs.org](http://ncbi-mass-sequence-downloader.readthedocs.io/en/latest/).\n\n\n## Citation:\nIf you use NCBI Mass Sequence Downloader in your research, please cite the [following paper](https://doi.org/10.1016/j.softx.2016.04.007):\n\n```\nPina-Martins, F., \u0026 Paulo, O. S. (2016). NCBI Mass Sequence Downloader–Large dataset downloading made easy. SoftwareX, 5, 80–83. https://doi.org/10.1016/j.softx.2016.04.007\n```\n\n\n## Dependencies:\n* Python 3 (and the standard lib)\n* [Requests](https://github.com/psf/requests)\n* [PyQt5](http://www.riverbankcomputing.com/software/pyqt/intro) for the GUI version\n\n\n## License:\nGPLv3\n\n\n## Found a bug?\nOr would like a feature added? Or maybe drop some feedback?\nJust [open a new issue](https://github.com/StuntsPT/NCBI_Mass_Downloader/issues/new).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuntspt%2Fncbi_mass_downloader","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstuntspt%2Fncbi_mass_downloader","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuntspt%2Fncbi_mass_downloader/lists"}