{"id":16618747,"url":"https://github.com/stuntspt/structure_threader","last_synced_at":"2025-03-21T14:31:42.480Z","repository":{"id":28100130,"uuid":"31598374","full_name":"StuntsPT/Structure_threader","owner":"StuntsPT","description":"A wrapper program to parallelize and automate runs of \"Structure\", \"fastStructure\" and \"MavericK\".","archived":false,"fork":false,"pushed_at":"2023-08-02T10:10:09.000Z","size":52460,"stargazers_count":24,"open_issues_count":3,"forks_count":10,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-03-18T02:12:19.210Z","etag":null,"topics":["clustering","doi","genetics","parallelize","pypi","python","science","structure","structure-threader","wrapper"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/StuntsPT.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2015-03-03T12:56:42.000Z","updated_at":"2023-02-11T08:43:10.000Z","dependencies_parsed_at":"2022-09-02T19:01:11.165Z","dependency_job_id":"1798989c-f2a5-48ad-baa4-7481efb0b25f","html_url":"https://github.com/StuntsPT/Structure_threader","commit_stats":null,"previous_names":[],"tags_count":56,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FStructure_threader","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FStructure_threader/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FStructure_threader/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/StuntsPT%2FStructure_threader/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/StuntsPT","download_url":"https://codeload.github.com/StuntsPT/Structure_threader/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244815222,"owners_count":20514917,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["clustering","doi","genetics","parallelize","pypi","python","science","structure","structure-threader","wrapper"],"created_at":"2024-10-12T02:21:23.490Z","updated_at":"2025-03-21T14:31:37.555Z","avatar_url":"https://github.com/StuntsPT.png","language":"Python","readme":"# Structure_threader\nA program to parallelize the runs of [Structure](http://web.stanford.edu/group/pritchardlab/structure.html),  [fastStructure](https://rajanil.github.io/fastStructure/), [MavericK](http://www.bobverity.com/home/maverick/what-is-maverick/) and [ALStructure](https://github.com/StoreyLab/alstructure) software.\n\n[![Travis Status](https://travis-ci.org/StuntsPT/Structure_threader.svg?branch=master)](https://travis-ci.org/StuntsPT/Structure_threader) [![Documentation Status](https://readthedocs.org/projects/structure-threader/badge/?version=latest)](http://structure-threader.readthedocs.io/en/latest/?badge=latest)\n[![DOI](https://zenodo.org/badge/31598374.svg)](https://zenodo.org/badge/latestdoi/31598374)\n[![Codacy Badge](https://app.codacy.com/project/badge/Grade/becafd10f0bc4904b6d2857cf4c47ea4)](https://www.codacy.com/gh/StuntsPT/Structure_threader/dashboard?utm_source=github.com\u0026amp;utm_medium=referral\u0026amp;utm_content=StuntsPT/Structure_threader\u0026amp;utm_campaign=Badge_Grade)\n[![Pipeline Status](https://gitlab.com/StuntsPT/Structure_threader/badges/master/pipeline.svg)](https://gitlab.com/StuntsPT/Structure_threader/pipelines)\n\n\n## Installation\n\n```bash\npip3 install structure_threader\n```\n\n*Structure_threader* is available on\n[Pypi](https://pypi.python.org/pypi/structure_threader/). It can be\ninstalled by simply running the above command. If you are on a \\*nix like\nplatform, you can use the `--user` option if you can't or don't want to install\nthe program as `root` user. Binaries for STRUCTURE, fastStructure and\n*MavericK* are also distributed for GNU/Linux and Mac OS X. For more details,\nplease [check the\nmanual](http://structure-threader.readthedocs.io/en/latest/install/).\n\n\n## Manual\nThe complete documentation can be found on [readthedocs.org](http://structure-threader.readthedocs.io/en/latest/).\n\n\n## Citation\nIf you use *Structure_threader*, please cite our\n~~[Zenodo DOI](https://zenodo.org/badge/latestdoi/31598374).~~\n[Molecular Ecology Resources paper](http://doi.org/10.1111/1755-0998.12702)\n\n### Full citation:\n\u003cdiv class=\"csl-bib-body\" style=\"line-height: 2; margin-left: 2em; text-indent:-2em;\"\u003e\n  \u003cdiv class=\"csl-entry\"\u003ePina-Martins, F., Silva, D. N., Fino, J., \u0026amp; Paulo, O. S. (2017). Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems. \u003ci\u003eMolecular Ecology Resources\u003c/i\u003e, n/a-n/a. doi:10.1111/1755-0998.12702\u003c/div\u003e\n  \u003cspan class=\"Z3988\" title=\"url_ver=Z39.88-2004\u0026amp;ctx_ver=Z39.88-2004\u0026amp;rfr_id=info%3Asid%2Fzotero.org%3A2\u0026amp;rft_id=info%3Adoi%2F10.1111%2F1755-0998.12702\u0026amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal\u0026amp;rft.genre=article\u0026amp;rft.atitle=Structure_threader%3A%20An%20improved%20method%20for%20automation%20and%20parallelization%20of%20programs%20structure%2C%20fastStructure%20and%20MavericK%20on%20multicore%20CPU%20systems\u0026amp;rft.jtitle=Molecular%20Ecology%20Resources\u0026amp;rft.stitle=Mol%20Ecol%20Resour\u0026amp;rft.aufirst=Francisco\u0026amp;rft.aulast=Pina-Martins\u0026amp;rft.au=Francisco%20Pina-Martins\u0026amp;rft.au=Diogo%20N.%20Silva\u0026amp;rft.au=Joana%20Fino\u0026amp;rft.au=Oct%C3%A1vio%20S.%20Paulo\u0026amp;rft.date=2017-09-16\u0026amp;rft.pages=n%2Fa-n%2Fa\u0026amp;rft.spage=n%2Fa\u0026amp;rft.epage=n%2Fa\u0026amp;rft.issn=1755-0998\u0026amp;rft.language=en\"\u003e\u003c/span\u003e\n\u003c/div\u003e\n\n## License\nGPLv3\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuntspt%2Fstructure_threader","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fstuntspt%2Fstructure_threader","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fstuntspt%2Fstructure_threader/lists"}