{"id":24129445,"url":"https://github.com/synbiodex/sbol-visual","last_synced_at":"2026-02-26T15:41:09.923Z","repository":{"id":4790290,"uuid":"5942848","full_name":"SynBioDex/SBOL-visual","owner":"SynBioDex","description":"The reference implementation of the SBOL Visual standard","archived":false,"fork":false,"pushed_at":"2023-03-20T21:47:16.000Z","size":32958,"stargazers_count":34,"open_issues_count":25,"forks_count":16,"subscribers_count":30,"default_branch":"master","last_synced_at":"2025-03-19T05:02:08.906Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SynBioDex.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.html","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2012-09-25T00:15:39.000Z","updated_at":"2025-03-17T14:03:22.000Z","dependencies_parsed_at":"2023-01-11T16:36:43.299Z","dependency_job_id":"7c6262c7-e2a3-4585-906b-0d6256674510","html_url":"https://github.com/SynBioDex/SBOL-visual","commit_stats":null,"previous_names":[],"tags_count":8,"template":false,"template_full_name":null,"purl":"pkg:github/SynBioDex/SBOL-visual","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SynBioDex%2FSBOL-visual","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SynBioDex%2FSBOL-visual/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SynBioDex%2FSBOL-visual/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SynBioDex%2FSBOL-visual/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SynBioDex","download_url":"https://codeload.github.com/SynBioDex/SBOL-visual/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SynBioDex%2FSBOL-visual/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29863625,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-26T08:51:08.701Z","status":"ssl_error","status_checked_at":"2026-02-26T08:50:19.607Z","response_time":89,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-11T19:32:25.156Z","updated_at":"2026-02-26T15:41:09.896Z","avatar_url":"https://github.com/SynBioDex.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# SBOL Visual\n\nThis repository contains the reference implementation of SBOL Visual, including all glyphs.\n\n## Repository Structure\n\nSBOL Visual development follows the [GitFlow workflow](https://datasift.github.io/gitflow/IntroducingGitFlow.html).\nIts branch structure is thus:\n\n* The master branch of this repository should contain only releases and SEPs (see below).\n* The develop branch is used for release staging, and should contain only material that is approved but not yet released.\n* Proposals should be developed in \"feature\" branches, which are then merged into the develop branch after they are voted approved by the community.\n\n## Glyph Specification\n\nWithin the \"Glyphs\" directory, each individual glyph set has a sub-directory under its name.  In that directory are:\n\n- SVG outline files for the recommended glyph and any alternates.\n - Approved versions should have PDFs as well.  \n - Additional vector formats may be offered if desired. There should not be any raster formats like PNG or JPEG, however.\n- SVG \"specification\" files for the recomended glyphs and any alternates, annotating bounding box, fill, and recommended backbone alignment.\n- A markdown file that provides information about the glyph set:\n - Associated SO term(s).\n - Which glyph is recommended and which are alternates\n - An prose description of any intuition associated with each glyph's design.\n- Optionally, any examples useful for making a glyph's usage clear.\n\nGlyphs are specified relative to a standard canvas of size 0.5 x 0.5 inches, based on the SBOL Visual 1.0 \"Promoter\" and \"CDS\" symbols.\n\n## Submitting changes to the specification\n\nAny text for a non-trivial change should be approved by discussion as an Issue and/or SEP.\n\nProposed changes should be made in either a branch or a separate fork on GitHub.  To do this, follow standard git branching or forking procedure.  \n\nHere is an example of git commands to achieve this:\n\n    git clone https://github.com/SynBioDex/SBOL-visual.git\n    git pull origin master # MAKE SURE NO ONE HAS MADE ANY MORE CHANGES\n    git checkout -b \u003cnewBranch\u003e # CREATE NEW BRANCH\n    \n    # MAKE YOUR EDITS\n    \n    git add \u003cfilesYouChanged\u003e\n    git commit\n    git push origin \u003cnewBranch\u003e\n\nWhen you are ready for your changes to be reviewed for incorporation, create a pull request.\nIf you need help on pull requests see: https://help.github.com/articles/about-pull-requests/\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsynbiodex%2Fsbol-visual","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsynbiodex%2Fsbol-visual","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsynbiodex%2Fsbol-visual/lists"}