{"id":20585597,"url":"https://github.com/syngenta/imagej-plugins","last_synced_at":"2026-05-29T06:31:05.038Z","repository":{"id":178943889,"uuid":"661694295","full_name":"syngenta/imagej-plugins","owner":"syngenta","description":"ImageJ Plugins","archived":false,"fork":false,"pushed_at":"2023-07-07T14:36:52.000Z","size":1250,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-03-06T12:52:29.900Z","etag":null,"topics":["image-processing","imagej-plugins","java"],"latest_commit_sha":null,"homepage":"","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/syngenta.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-07-03T12:45:15.000Z","updated_at":"2023-07-05T13:36:53.000Z","dependencies_parsed_at":"2024-03-17T18:01:44.596Z","dependency_job_id":null,"html_url":"https://github.com/syngenta/imagej-plugins","commit_stats":null,"previous_names":["syngenta/imagej-plugins"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/syngenta/imagej-plugins","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/syngenta%2Fimagej-plugins","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/syngenta%2Fimagej-plugins/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/syngenta%2Fimagej-plugins/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/syngenta%2Fimagej-plugins/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/syngenta","download_url":"https://codeload.github.com/syngenta/imagej-plugins/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/syngenta%2Fimagej-plugins/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":33640627,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-05-29T02:00:06.066Z","response_time":107,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["image-processing","imagej-plugins","java"],"created_at":"2024-11-16T07:08:42.908Z","updated_at":"2026-05-29T06:31:05.017Z","avatar_url":"https://github.com/syngenta.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Syngenta ImageJ Plugins\n\nThis repository contains the following ImageJ plug-ins:\n\n+ Segmentation \u003e Hue Colours: segment an image in colour-space\n\n## Installation\n\nBuild `hue-colours-N.N.N.jar` using Maven:\n\n```\nmaven package\n```\n\nThen copy the JAR file to ImageJ's `plugins` folder, replacing or deleting any old version of the JAR. **Note**, ImageJ\nrequires that JAR filenames in the `plugins` folder must have a leading underscore, e.g. `_hue-colours.jar`.\n\n## Run\n\nThe filter can be found under the ImageJ Plugins menu:\n\nPlugins \u003e Segmentation \u003e Hue Colours\n\nTo invoke the filter from a macro use the following, e.g.\n\n`run(\"Hue Colours\", \"\u003cparameter values\u003e\");`\n\nTo invoke the filter programmatically use the `PlugInFilterRunner`, e.g.\n\n```java\nimport ij.ImagePlus;\nimport ij.WindowManager;\nimport ij.io.Opener;\nimport ij.plugin.filter.PlugInFilter;\nimport ij.plugin.filter.PlugInFilterRunner;\n\nimport com.syngenta.imagej.plugins.imagecolours.HueColoursFilter;\n\n// Open an image and make it current image.\nfinal ImagePlus image=new Opener().openImage(inputImagePath);\n        WindowManager.setTempCurrentImage(image);\n\n// Create and apply the filter to the current image.\nfinal PluginFilter filter=new HueColoursFilter();\n        new PlugInFilterRunner(filter,\"\",\"\");\n```\nSee also, `HueColoursExample.java` for a more complete example.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsyngenta%2Fimagej-plugins","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsyngenta%2Fimagej-plugins","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsyngenta%2Fimagej-plugins/lists"}