{"id":22308558,"url":"https://github.com/sysbiochalmers/kiwi","last_synced_at":"2026-06-10T16:31:36.369Z","repository":{"id":96828465,"uuid":"53480254","full_name":"SysBioChalmers/Kiwi","owner":"SysBioChalmers","description":"The Kiwi python package combines gene-set analyses with biological networks to visualize the interactions between genesets that are significant in a given biological system.","archived":false,"fork":false,"pushed_at":"2017-10-10T06:38:14.000Z","size":5441,"stargazers_count":2,"open_issues_count":1,"forks_count":2,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-01-30T22:51:18.550Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://www.sysbio.se/kiwi","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SysBioChalmers.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGES.txt","contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2016-03-09T08:17:07.000Z","updated_at":"2019-01-28T14:08:05.000Z","dependencies_parsed_at":null,"dependency_job_id":"50c14de2-3cb7-45f2-8d41-9e619b0d1427","html_url":"https://github.com/SysBioChalmers/Kiwi","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2FKiwi","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2FKiwi/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2FKiwi/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2FKiwi/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SysBioChalmers","download_url":"https://codeload.github.com/SysBioChalmers/Kiwi/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245571075,"owners_count":20637276,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-03T20:14:23.041Z","updated_at":"2026-06-10T16:31:31.348Z","avatar_url":"https://github.com/SysBioChalmers.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Kiwi \n\u003chtml\u003e\u003cimg src=\"doc/kiwi_logo.png\" alt=\"Kiwi logo\" width=\"200px\"/ align=\"right\"\u003e\n\nWhat is Kiwi? Kiwi combines gene-set analysis with biological networks to visualize the interactions between gene-sets that are significant in a given biological system. You can read more about this in the [publication](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-014-0408-9) and on the [Kiwi webpage](http://www.sysbio.se/kiwi).\n\n## Release version\nKiwi is released on PyPI and all information about how to install and run Kiwi can be found on the [Kiwi webpage](http://www.sysbio.se/kiwi). The easiest way to install Kiwi with all required dependencies is to run:\n\n```\npip install KiwiDist\n```\n\n## Development version\nThe source code is hosted on GitHub, so if you want to install the latest development version of Kiwi, fork and clone this repository and run:\n\n```\npython install setup.py\n```\n\n## Pre-compiled gene-set networks for metabolic networks\nThere are some gene-set network (GSN) files and gene-set collection (GSC) files in the kiwi/data directory.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsysbiochalmers%2Fkiwi","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsysbiochalmers%2Fkiwi","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsysbiochalmers%2Fkiwi/lists"}