{"id":22308545,"url":"https://github.com/sysbiochalmers/sybil","last_synced_at":"2025-07-29T06:30:37.944Z","repository":{"id":39406203,"uuid":"459485898","full_name":"SysBioChalmers/sybil","owner":"SysBioChalmers","description":"Efficient Constrained Based Modelling in R","archived":false,"fork":false,"pushed_at":"2023-08-02T05:25:35.000Z","size":634,"stargazers_count":6,"open_issues_count":1,"forks_count":1,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-06-04T13:30:09.274Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SysBioChalmers.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-02-15T08:11:21.000Z","updated_at":"2023-11-06T11:59:51.000Z","dependencies_parsed_at":"2025-05-28T08:02:03.949Z","dependency_job_id":"532f1d5f-7c20-446d-9167-bc26ef17eb1e","html_url":"https://github.com/SysBioChalmers/sybil","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/SysBioChalmers/sybil","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2Fsybil","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2Fsybil/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2Fsybil/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2Fsybil/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SysBioChalmers","download_url":"https://codeload.github.com/SysBioChalmers/sybil/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SysBioChalmers%2Fsybil/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267639569,"owners_count":24119780,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-29T02:00:12.549Z","response_time":2574,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-03T20:14:20.081Z","updated_at":"2025-07-29T06:30:37.497Z","avatar_url":"https://github.com/SysBioChalmers.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# sybil - Efficient Constrained Based Modelling in R\n\nThe package `sybil` is a Systems Biology Library for R, implementing algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis).\n\n### Installation\n\nFor various reasons, `sybil` is temporarily not available on CRAN anymore. Until then, use the following commands in the R console to install this package:\n\n```R\ninstall.packages(\"remotes\")\nremotes::install_github(\"SysBioChalmers/sybil\")\n```\n\n### Cite us\n\nIf you use _sybil_ in your work, please cite:\n\u003e Gelius-Dietrich _et al_. sybil – Efficient constraint-based modelling in R. BMC Syst Biol 7, 125 (2013). doi: [10.1186/1752-0509-7-125](https://doi.org/10.1186/1752-0509-7-125)\n\n\n### Contact\n\nIf you're facing any problems, please open an [issue](https://github.com/SysBioChalmers/sybil/issues/new) or a [discussion](https://github.com/SysBioChalmers/sybil/discussions/new) or join the [![join the chat at https://gitter.im/SysBioChalmers/sybil](https://badges.gitter.im/SysBioChalmers/sybil.svg)](https://gitter.im/SysBioChalmers/RAVEN?utm_source=badge\u0026utm_medium=badge\u0026utm_campaign=pr-badge\u0026utm_content=badge).\n\n\u003cbr\u003e\n\n_Note_: This repository was previously hosted at https://gitlab.cs.uni-duesseldorf.de/general/ccb/sybil.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsysbiochalmers%2Fsybil","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fsysbiochalmers%2Fsybil","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fsysbiochalmers%2Fsybil/lists"}