{"id":21041477,"url":"https://github.com/tfesenko/seqans","last_synced_at":"2025-06-22T00:34:37.119Z","repository":{"id":80972636,"uuid":"88804706","full_name":"tfesenko/SeqAns","owner":"tfesenko","description":"Annotate your DNA, RNA, or protein sequences. 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Open https://tfesenko.github.io/SeqAns/ \n2. Load a FASTA file\nClick on File \u003e Import FASTA file:\n\u003cimg src=\"http://i.imgur.com/UBoIQ6H.png\" alt=\"file import FASTA\" width=\"200\" /\u003e\nThen, Choose file in the file system and Load it: \n\u003cimg src=\"http://i.imgur.com/QPKt12y.png\" alt=\"FASTA choose and load\" width=\"200\" /\u003e\nThe FASTA file should contain all your sequences, an example of such file is [here]()\n3. (Optional) Change the name of sequences\nSeqAns uses the string betweeen \"\u003e\" and \"|\" as from NAFTA file sequence name, by you can change it by clicking on the sequence title and editing it:\n\u003cimg src=\"http://i.imgur.com/9jebgO9.gif\" alt=\"edit title\" width=\"200\" /\u003e\n4. Annotate the sequences\nSelect letters that you want to annotate in a sequence and press \"Enter\". (You can also use the Edit\u003eAnnotation action in the navbar). All other sequences will be selected.\n\n5. Save it as an SVG file\nSave as SVG file by clicking on File\u003eSave as SVG. The file will be saved in the browser's donwload folder as \"sequence.svg\"\n\u003cimg src=\"http://i.imgur.com/WGkdmlf.png\" alt=\"save as SVG\" width=\"200\" /\u003e\nSave as PNG is on the way!\n\n## SeqAns runs in your browser, no calls to the server\nSequences are rendered in the browser using a JavaScript library called [d3.js (v3)](https://github.com/d3/d3/releases/v3.0.0).\nSeqAns uses [FileSaver.js](https://github.com/eligrey/FileSaver.js/) to save to file.\nSeqAns also uses local storage to preserve editings.\n\n## Running from sources\nYou can also run SeqAns directly from sources, just open the root index.html file in the browser of your choice, no server needed.\n\n# License\nLicensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at apache.org/licenses/LICENSE-2.0\n\nUnless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftfesenko%2Fseqans","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftfesenko%2Fseqans","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftfesenko%2Fseqans/lists"}